Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC144BQ3MJ40 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC144BQ3MJ40 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC144BQ3MJ40 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC144BQ3MJ40 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
CCDC144BQ3MJ40 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CCDC144BQ3MJ40 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 TTTY23B-201ENST00000442790 549 ntBASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 RAB43P1-201ENST00000561790 589 ntBASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 AC005622.1-201ENST00000636801 1703 ntBASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.23■□□□□ 0.51
CCDC144BQ3MJ40 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 FADS2-205ENST00000517839 469 ntTSL 3 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 AC092337.1-201ENST00000568699 1129 ntBASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 AC093726.1-201ENST00000608064 963 ntBASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 AP003680.1-201ENST00000598970 3660 ntBASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.22■□□□□ 0.51
CCDC144BQ3MJ40 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 AL136982.4-201ENST00000437689 1740 ntBASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 MIR658-201ENST00000385210 100 ntBASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC144BQ3MJ40 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms