Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RNF4P78317 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RNF4P78317 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RNF4P78317 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
RNF4P78317 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.54□□□□□ -0.08
RNF4P78317 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
RNF4P78317 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.54□□□□□ -0.08
RNF4P78317 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
RNF4P78317 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC14.53□□□□□ -0.08
RNF4P78317 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
RNF4P78317 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
RNF4P78317 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
RNF4P78317 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.53□□□□□ -0.08
RNF4P78317 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.53□□□□□ -0.08
RNF4P78317 AC022188.1-201ENST00000620960 1664 ntBASIC14.53□□□□□ -0.08
RNF4P78317 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 AL121723.1-201ENST00000445194 1519 ntBASIC14.53□□□□□ -0.08
RNF4P78317 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
RNF4P78317 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.53□□□□□ -0.08
RNF4P78317 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.53□□□□□ -0.08
RNF4P78317 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.53□□□□□ -0.08
RNF4P78317 KRT18P43-201ENST00000469825 1281 ntBASIC14.53□□□□□ -0.08
RNF4P78317 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.53□□□□□ -0.08
RNF4P78317 AC104596.2-201ENST00000512793 793 ntBASIC14.53□□□□□ -0.08
RNF4P78317 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.53□□□□□ -0.08
RNF4P78317 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.53□□□□□ -0.08
RNF4P78317 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.53□□□□□ -0.08
RNF4P78317 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.53□□□□□ -0.08
RNF4P78317 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.53□□□□□ -0.08
RNF4P78317 AC008494.3-201ENST00000606615 944 ntBASIC14.53□□□□□ -0.08
RNF4P78317 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
RNF4P78317 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
RNF4P78317 AC025048.6-201ENST00000634326 1161 ntBASIC14.53□□□□□ -0.08
RNF4P78317 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
RNF4P78317 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.53□□□□□ -0.08
RNF4P78317 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.53□□□□□ -0.08
RNF4P78317 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
RNF4P78317 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.52□□□□□ -0.08
RNF4P78317 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
RNF4P78317 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
RNF4P78317 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RNF4P78317 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
RNF4P78317 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
RNF4P78317 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.52□□□□□ -0.08
RNF4P78317 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RNF4P78317 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
RNF4P78317 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
RNF4P78317 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.52□□□□□ -0.08
RNF4P78317 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.52□□□□□ -0.08
RNF4P78317 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RNF4P78317 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
RNF4P78317 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RNF4P78317 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
RNF4P78317 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
RNF4P78317 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
RNF4P78317 AL133267.1-201ENST00000398220 340 ntBASIC14.52□□□□□ -0.09
RNF4P78317 MYCLP2-201ENST00000449268 967 ntBASIC14.52□□□□□ -0.09
RNF4P78317 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.52□□□□□ -0.09
RNF4P78317 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
RNF4P78317 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.52□□□□□ -0.09
RNF4P78317 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.52□□□□□ -0.09
RNF4P78317 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.52□□□□□ -0.09
RNF4P78317 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
RNF4P78317 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.52□□□□□ -0.09
RNF4P78317 AC105233.6-201ENST00000642093 218 ntBASIC14.52□□□□□ -0.09
RNF4P78317 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.52□□□□□ -0.09
RNF4P78317 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RNF4P78317 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RNF4P78317 CICP13-201ENST00000422015 2789 ntBASIC14.52□□□□□ -0.09
RNF4P78317 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
RNF4P78317 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
RNF4P78317 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
RNF4P78317 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RNF4P78317 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
RNF4P78317 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
RNF4P78317 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
RNF4P78317 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
RNF4P78317 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.52□□□□□ -0.09
RNF4P78317 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.52□□□□□ -0.09
RNF4P78317 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RNF4P78317 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RNF4P78317 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
RNF4P78317 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms