Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN1P58418 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CLRN1P58418 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN1P58418 AC127383.1-201ENST00000444697 1800 ntBASIC14.07□□□□□ -0.16
CLRN1P58418 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN1P58418 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN1P58418 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN1P58418 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN1P58418 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.07□□□□□ -0.16
CLRN1P58418 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.07□□□□□ -0.16
CLRN1P58418 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
CLRN1P58418 AC125807.1-201ENST00000483097 614 ntBASIC14.07□□□□□ -0.16
CLRN1P58418 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.07□□□□□ -0.16
CLRN1P58418 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.07□□□□□ -0.16
CLRN1P58418 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.07□□□□□ -0.16
CLRN1P58418 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.07□□□□□ -0.16
CLRN1P58418 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.07□□□□□ -0.16
CLRN1P58418 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.07□□□□□ -0.16
CLRN1P58418 MIR6069-201ENST00000620069 79 ntBASIC14.07□□□□□ -0.16
CLRN1P58418 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN1P58418 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN1P58418 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.07□□□□□ -0.16
CLRN1P58418 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN1P58418 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN1P58418 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN1P58418 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN1P58418 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
CLRN1P58418 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.07□□□□□ -0.16
CLRN1P58418 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN1P58418 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.07□□□□□ -0.16
CLRN1P58418 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN1P58418 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLRN1P58418 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CLRN1P58418 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
CLRN1P58418 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.06□□□□□ -0.16
CLRN1P58418 AC090616.6-203ENST00000579186 1945 ntBASIC14.06□□□□□ -0.16
CLRN1P58418 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CLRN1P58418 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
CLRN1P58418 SBF1P1-201ENST00000444527 5631 ntBASIC14.06□□□□□ -0.16
CLRN1P58418 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CLRN1P58418 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.06□□□□□ -0.16
CLRN1P58418 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.06□□□□□ -0.16
CLRN1P58418 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.06□□□□□ -0.16
CLRN1P58418 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.06□□□□□ -0.16
CLRN1P58418 AP001160.2-201ENST00000596071 487 ntBASIC14.06□□□□□ -0.16
CLRN1P58418 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.06□□□□□ -0.16
CLRN1P58418 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.06□□□□□ -0.16
CLRN1P58418 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.06□□□□□ -0.16
CLRN1P58418 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CLRN1P58418 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 TUBB3P1-201ENST00000405796 1332 ntBASIC14.06□□□□□ -0.16
CLRN1P58418 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.06□□□□□ -0.16
CLRN1P58418 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.06□□□□□ -0.16
CLRN1P58418 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
CLRN1P58418 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.06□□□□□ -0.16
CLRN1P58418 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.06□□□□□ -0.16
CLRN1P58418 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.06□□□□□ -0.16
CLRN1P58418 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.06□□□□□ -0.16
CLRN1P58418 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CLRN1P58418 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.05□□□□□ -0.16
CLRN1P58418 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
CLRN1P58418 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.05□□□□□ -0.16
CLRN1P58418 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 AL607033.1-201ENST00000623900 1599 ntBASIC14.05□□□□□ -0.16
CLRN1P58418 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.05□□□□□ -0.16
CLRN1P58418 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.05□□□□□ -0.16
CLRN1P58418 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms