Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
EPHB3P54753 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
EPHB3P54753 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.31■□□□□ 0.2
EPHB3P54753 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
EPHB3P54753 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.31■□□□□ 0.2
EPHB3P54753 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.31■□□□□ 0.2
EPHB3P54753 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
EPHB3P54753 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.31■□□□□ 0.2
EPHB3P54753 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC16.31■□□□□ 0.2
EPHB3P54753 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.31■□□□□ 0.2
EPHB3P54753 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC16.31■□□□□ 0.2
EPHB3P54753 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC16.31■□□□□ 0.2
EPHB3P54753 RNA5SP412-201ENST00000516234 123 ntBASIC16.31■□□□□ 0.2
EPHB3P54753 AL583810.1-201ENST00000553344 1045 ntBASIC16.31■□□□□ 0.2
EPHB3P54753 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.31■□□□□ 0.2
EPHB3P54753 BX539320.1-201ENST00000623759 877 ntBASIC16.31■□□□□ 0.2
EPHB3P54753 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
EPHB3P54753 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.31■□□□□ 0.2
EPHB3P54753 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
EPHB3P54753 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.31■□□□□ 0.2
EPHB3P54753 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.31■□□□□ 0.2
EPHB3P54753 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 AC006449.5-201ENST00000610658 2098 ntBASIC16.31■□□□□ 0.2
EPHB3P54753 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
EPHB3P54753 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
EPHB3P54753 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.31■□□□□ 0.2
EPHB3P54753 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
EPHB3P54753 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
EPHB3P54753 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.3■□□□□ 0.2
EPHB3P54753 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.3■□□□□ 0.2
EPHB3P54753 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
EPHB3P54753 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
EPHB3P54753 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 APOC3-202ENST00000375345 604 ntTSL 5 BASIC16.3■□□□□ 0.2
EPHB3P54753 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC16.3■□□□□ 0.2
EPHB3P54753 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.3■□□□□ 0.2
EPHB3P54753 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.3■□□□□ 0.2
EPHB3P54753 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.3■□□□□ 0.2
EPHB3P54753 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.3■□□□□ 0.2
EPHB3P54753 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.3■□□□□ 0.2
EPHB3P54753 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.3■□□□□ 0.2
EPHB3P54753 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.3■□□□□ 0.2
EPHB3P54753 AC244669.2-201ENST00000612320 853 ntBASIC16.3■□□□□ 0.2
EPHB3P54753 RHOXF1P1-202ENST00000635473 501 ntBASIC16.3■□□□□ 0.2
EPHB3P54753 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.3■□□□□ 0.2
EPHB3P54753 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.3■□□□□ 0.2
EPHB3P54753 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.3■□□□□ 0.2
EPHB3P54753 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.3■□□□□ 0.2
EPHB3P54753 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 PCDH8P1-201ENST00000428983 2773 ntBASIC16.3■□□□□ 0.2
EPHB3P54753 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
EPHB3P54753 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
EPHB3P54753 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.3■□□□□ 0.2
EPHB3P54753 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.3■□□□□ 0.2
EPHB3P54753 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.3■□□□□ 0.2
EPHB3P54753 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
EPHB3P54753 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
EPHB3P54753 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
EPHB3P54753 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
EPHB3P54753 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
EPHB3P54753 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
EPHB3P54753 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
EPHB3P54753 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
EPHB3P54753 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
EPHB3P54753 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
EPHB3P54753 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
EPHB3P54753 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
EPHB3P54753 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.29■□□□□ 0.2
EPHB3P54753 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.29■□□□□ 0.2
EPHB3P54753 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms