Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CTCFP49711 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CTCFP49711 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CTCFP49711 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.06■□□□□ 0.48
CTCFP49711 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CTCFP49711 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CTCFP49711 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.06■□□□□ 0.48
CTCFP49711 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC18.06■□□□□ 0.48
CTCFP49711 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC18.06■□□□□ 0.48
CTCFP49711 DNM1P51-201ENST00000558149 522 ntBASIC18.06■□□□□ 0.48
CTCFP49711 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC18.06■□□□□ 0.48
CTCFP49711 ECM1P1-201ENST00000604092 1279 ntBASIC18.06■□□□□ 0.48
CTCFP49711 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.06■□□□□ 0.48
CTCFP49711 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.06■□□□□ 0.48
CTCFP49711 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
CTCFP49711 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CTCFP49711 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CTCFP49711 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CTCFP49711 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTCFP49711 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CTCFP49711 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.05■□□□□ 0.48
CTCFP49711 TUBB8P12-201ENST00000308911 1335 ntBASIC18.05■□□□□ 0.48
CTCFP49711 TUBB7P-202ENST00000428444 1305 ntBASIC18.05■□□□□ 0.48
CTCFP49711 TUBB8P7-204ENST00000567960 1332 ntBASIC18.05■□□□□ 0.48
CTCFP49711 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CTCFP49711 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CTCFP49711 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CTCFP49711 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTCFP49711 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTCFP49711 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTCFP49711 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CTCFP49711 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CTCFP49711 CMC1-204ENST00000423894 549 ntTSL 2 BASIC18.05■□□□□ 0.48
CTCFP49711 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC18.05■□□□□ 0.48
CTCFP49711 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC18.05■□□□□ 0.48
CTCFP49711 DNM1P30-201ENST00000563586 452 ntBASIC18.05■□□□□ 0.48
CTCFP49711 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CTCFP49711 FO393412.1-201ENST00000619841 382 ntBASIC18.05■□□□□ 0.48
CTCFP49711 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC18.05■□□□□ 0.48
CTCFP49711 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.05■□□□□ 0.48
CTCFP49711 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CTCFP49711 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTCFP49711 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.05■□□□□ 0.48
CTCFP49711 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CTCFP49711 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CTCFP49711 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTCFP49711 AC016396.2-201ENST00000562575 1417 ntBASIC18.05■□□□□ 0.48
CTCFP49711 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.05■□□□□ 0.48
CTCFP49711 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTCFP49711 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.05■□□□□ 0.48
CTCFP49711 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTCFP49711 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CTCFP49711 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
CTCFP49711 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CTCFP49711 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTCFP49711 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTCFP49711 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTCFP49711 TPM3P8-201ENST00000330554 643 ntBASIC18.04■□□□□ 0.48
CTCFP49711 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CTCFP49711 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTCFP49711 KRT18P64-201ENST00000434946 1219 ntBASIC18.04■□□□□ 0.48
CTCFP49711 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTCFP49711 PIN4P1-201ENST00000451079 396 ntBASIC18.04■□□□□ 0.48
CTCFP49711 IGHV3-37-201ENST00000518544 340 ntBASIC18.04■□□□□ 0.48
CTCFP49711 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTCFP49711 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTCFP49711 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTCFP49711 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC18.04■□□□□ 0.48
CTCFP49711 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC18.04■□□□□ 0.48
CTCFP49711 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC18.04■□□□□ 0.48
CTCFP49711 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC18.04■□□□□ 0.48
CTCFP49711 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTCFP49711 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
CTCFP49711 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTCFP49711 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CTCFP49711 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTCFP49711 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTCFP49711 MST1L-201ENST00000442552 2185 ntBASIC18.04■□□□□ 0.48
CTCFP49711 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTCFP49711 SNX33P1-201ENST00000592116 1762 ntBASIC18.04■□□□□ 0.48
CTCFP49711 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CTCFP49711 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CTCFP49711 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CTCFP49711 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms