Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.4■□□□□ 0.54
NEDD4P46934 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NEDD4P46934 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NEDD4P46934 AC022532.1-201ENST00000624563 1728 ntBASIC18.4■□□□□ 0.54
NEDD4P46934 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NEDD4P46934 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NEDD4P46934 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NEDD4P46934 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NEDD4P46934 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.4■□□□□ 0.54
NEDD4P46934 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NEDD4P46934 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NEDD4P46934 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC18.4■□□□□ 0.54
NEDD4P46934 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.4■□□□□ 0.54
NEDD4P46934 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC18.4■□□□□ 0.54
NEDD4P46934 VDAC1P7-201ENST00000462417 847 ntBASIC18.4■□□□□ 0.54
NEDD4P46934 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC18.4■□□□□ 0.54
NEDD4P46934 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC18.4■□□□□ 0.54
NEDD4P46934 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC18.4■□□□□ 0.54
NEDD4P46934 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NEDD4P46934 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.4■□□□□ 0.54
NEDD4P46934 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC18.4■□□□□ 0.54
NEDD4P46934 AC025181.2-201ENST00000606994 802 ntBASIC18.4■□□□□ 0.54
NEDD4P46934 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NEDD4P46934 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NEDD4P46934 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
NEDD4P46934 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.4■□□□□ 0.54
NEDD4P46934 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.4■□□□□ 0.54
NEDD4P46934 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NEDD4P46934 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NEDD4P46934 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
NEDD4P46934 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
NEDD4P46934 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.39■□□□□ 0.54
NEDD4P46934 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
NEDD4P46934 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.39■□□□□ 0.53
NEDD4P46934 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC18.39■□□□□ 0.53
NEDD4P46934 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
NEDD4P46934 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC18.39■□□□□ 0.53
NEDD4P46934 COX20P2-201ENST00000452636 358 ntBASIC18.39■□□□□ 0.53
NEDD4P46934 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.39■□□□□ 0.53
NEDD4P46934 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC18.39■□□□□ 0.53
NEDD4P46934 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC18.39■□□□□ 0.53
NEDD4P46934 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.39■□□□□ 0.53
NEDD4P46934 AC092552.1-201ENST00000547243 906 ntBASIC18.39■□□□□ 0.53
NEDD4P46934 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NEDD4P46934 C18orf15-201ENST00000623680 2534 ntBASIC18.39■□□□□ 0.53
NEDD4P46934 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
NEDD4P46934 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
NEDD4P46934 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.38■□□□□ 0.53
NEDD4P46934 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.38■□□□□ 0.53
NEDD4P46934 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC18.38■□□□□ 0.53
NEDD4P46934 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
NEDD4P46934 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.38■□□□□ 0.53
NEDD4P46934 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.38■□□□□ 0.53
NEDD4P46934 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.38■□□□□ 0.53
NEDD4P46934 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC18.38■□□□□ 0.53
NEDD4P46934 TAF8-206ENST00000472818 719 ntTSL 2 BASIC18.38■□□□□ 0.53
NEDD4P46934 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.38■□□□□ 0.53
NEDD4P46934 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
NEDD4P46934 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.38■□□□□ 0.53
NEDD4P46934 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.38■□□□□ 0.53
NEDD4P46934 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
NEDD4P46934 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
NEDD4P46934 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NEDD4P46934 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
NEDD4P46934 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms