Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC13.69□□□□□ -0.22
COL8A1P27658 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC13.69□□□□□ -0.22
COL8A1P27658 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.69□□□□□ -0.22
COL8A1P27658 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
COL8A1P27658 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
COL8A1P27658 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC13.69□□□□□ -0.22
COL8A1P27658 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
COL8A1P27658 KRTAP4-4-201ENST00000390661 1081 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
COL8A1P27658 YIPF7-202ENST00000415895 1196 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
COL8A1P27658 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC13.69□□□□□ -0.22
COL8A1P27658 Z97180.1-201ENST00000445173 988 ntBASIC13.69□□□□□ -0.22
COL8A1P27658 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.69□□□□□ -0.22
COL8A1P27658 RN7SL11P-201ENST00000471305 293 ntBASIC13.69□□□□□ -0.22
COL8A1P27658 AC104784.1-201ENST00000473096 294 ntBASIC13.69□□□□□ -0.22
COL8A1P27658 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC13.69□□□□□ -0.22
COL8A1P27658 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC13.69□□□□□ -0.22
COL8A1P27658 AC044849.1-201ENST00000519737 1188 ntBASIC13.69□□□□□ -0.22
COL8A1P27658 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC13.69□□□□□ -0.22
COL8A1P27658 SDHD-202ENST00000525291 790 ntTSL 3 BASIC13.69□□□□□ -0.22
COL8A1P27658 CFL1-214ENST00000534769 758 ntTSL 2 BASIC13.69□□□□□ -0.22
COL8A1P27658 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
COL8A1P27658 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC13.69□□□□□ -0.22
COL8A1P27658 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC13.69□□□□□ -0.22
COL8A1P27658 AC018635.2-201ENST00000608625 364 ntBASIC13.69□□□□□ -0.22
COL8A1P27658 AC145423.3-201ENST00000615987 467 ntBASIC13.69□□□□□ -0.22
COL8A1P27658 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
COL8A1P27658 PAX6-247ENST00000638965 979 ntTSL 5 BASIC13.69□□□□□ -0.22
COL8A1P27658 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
COL8A1P27658 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC13.69□□□□□ -0.22
COL8A1P27658 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
COL8A1P27658 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC13.69□□□□□ -0.22
COL8A1P27658 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
COL8A1P27658 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC13.69□□□□□ -0.22
COL8A1P27658 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL8A1P27658 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
COL8A1P27658 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
COL8A1P27658 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
COL8A1P27658 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
COL8A1P27658 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
COL8A1P27658 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
COL8A1P27658 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC13.68□□□□□ -0.22
COL8A1P27658 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC13.68□□□□□ -0.22
COL8A1P27658 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
COL8A1P27658 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
COL8A1P27658 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
COL8A1P27658 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
COL8A1P27658 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC13.68□□□□□ -0.22
COL8A1P27658 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC13.68□□□□□ -0.22
COL8A1P27658 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 AC234644.1-201ENST00000406065 370 ntBASIC13.68□□□□□ -0.22
COL8A1P27658 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC13.68□□□□□ -0.22
COL8A1P27658 RPL13AP19-201ENST00000434320 584 ntBASIC13.68□□□□□ -0.22
COL8A1P27658 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC13.68□□□□□ -0.22
COL8A1P27658 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.68□□□□□ -0.22
COL8A1P27658 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 AC126915.1-201ENST00000522847 1038 ntBASIC13.68□□□□□ -0.22
COL8A1P27658 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC13.68□□□□□ -0.22
COL8A1P27658 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC13.68□□□□□ -0.22
COL8A1P27658 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.68□□□□□ -0.22
COL8A1P27658 KSR1-207ENST00000578981 748 ntTSL 4 BASIC13.68□□□□□ -0.22
COL8A1P27658 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.68□□□□□ -0.22
COL8A1P27658 MIR4321-201ENST00000592276 80 ntBASIC13.68□□□□□ -0.22
COL8A1P27658 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC13.68□□□□□ -0.22
COL8A1P27658 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
COL8A1P27658 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
COL8A1P27658 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC13.68□□□□□ -0.22
COL8A1P27658 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
COL8A1P27658 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC13.68□□□□□ -0.22
COL8A1P27658 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 AL031731.1-201ENST00000642131 2094 ntBASIC13.68□□□□□ -0.22
COL8A1P27658 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
COL8A1P27658 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC13.68□□□□□ -0.22
COL8A1P27658 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL8A1P27658 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms