Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC21.53■■□□□ 1.04
NPHP4O75161 TMCO5B-205ENST00000530020 894 ntBASIC21.53■■□□□ 1.04
NPHP4O75161 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
NPHP4O75161 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC21.53■■□□□ 1.04
NPHP4O75161 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC21.53■■□□□ 1.04
NPHP4O75161 AP001527.2-201ENST00000614441 631 ntBASIC21.53■■□□□ 1.04
NPHP4O75161 AC148477.9-201ENST00000623974 539 ntBASIC21.53■■□□□ 1.04
NPHP4O75161 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC21.53■■□□□ 1.04
NPHP4O75161 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
NPHP4O75161 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP4O75161 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
NPHP4O75161 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP4O75161 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP4O75161 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC21.52■■□□□ 1.04
NPHP4O75161 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC21.52■■□□□ 1.04
NPHP4O75161 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC21.52■■□□□ 1.04
NPHP4O75161 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP4O75161 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP4O75161 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC21.52■■□□□ 1.04
NPHP4O75161 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP4O75161 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
NPHP4O75161 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC21.52■■□□□ 1.04
NPHP4O75161 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
NPHP4O75161 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP4O75161 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP4O75161 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP4O75161 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC21.52■■□□□ 1.04
NPHP4O75161 CDC23-208ENST00000505120 455 ntTSL 3 BASIC21.52■■□□□ 1.04
NPHP4O75161 ALG1L13P-202ENST00000519320 584 ntBASIC21.52■■□□□ 1.04
NPHP4O75161 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC21.52■■□□□ 1.04
NPHP4O75161 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC21.52■■□□□ 1.04
NPHP4O75161 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC21.52■■□□□ 1.04
NPHP4O75161 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
NPHP4O75161 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC21.52■■□□□ 1.04
NPHP4O75161 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC21.52■■□□□ 1.04
NPHP4O75161 RNF146-211ENST00000609447 607 ntTSL 4 BASIC21.52■■□□□ 1.04
NPHP4O75161 AC105137.3-201ENST00000617588 984 ntBASIC21.52■■□□□ 1.04
NPHP4O75161 AC138466.4-201ENST00000623965 852 ntBASIC21.52■■□□□ 1.04
NPHP4O75161 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP4O75161 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC21.52■■□□□ 1.03
NPHP4O75161 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC21.51■■□□□ 1.03
NPHP4O75161 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
NPHP4O75161 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP4O75161 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP4O75161 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC21.51■■□□□ 1.03
NPHP4O75161 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC21.51■■□□□ 1.03
NPHP4O75161 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP4O75161 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.51■■□□□ 1.03
NPHP4O75161 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP4O75161 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP4O75161 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP4O75161 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP4O75161 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC21.51■■□□□ 1.03
NPHP4O75161 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
NPHP4O75161 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC21.51■■□□□ 1.03
NPHP4O75161 REEP5-205ENST00000504247 480 ntTSL 5 BASIC21.51■■□□□ 1.03
NPHP4O75161 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC21.51■■□□□ 1.03
NPHP4O75161 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC21.51■■□□□ 1.03
NPHP4O75161 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC21.51■■□□□ 1.03
NPHP4O75161 FO393412.1-201ENST00000619841 382 ntBASIC21.51■■□□□ 1.03
NPHP4O75161 AL645728.2-202ENST00000641679 227 ntBASIC21.51■■□□□ 1.03
NPHP4O75161 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP4O75161 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
NPHP4O75161 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP4O75161 AL008718.2-201ENST00000609206 1313 ntBASIC21.51■■□□□ 1.03
NPHP4O75161 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP4O75161 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP4O75161 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP4O75161 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP4O75161 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHP4O75161 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
NPHP4O75161 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
NPHP4O75161 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
NPHP4O75161 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
NPHP4O75161 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
NPHP4O75161 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP4O75161 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP4O75161 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHP4O75161 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP4O75161 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHP4O75161 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC21.5■■□□□ 1.03
NPHP4O75161 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHP4O75161 AL157813.1-201ENST00000612996 587 ntBASIC21.5■■□□□ 1.03
NPHP4O75161 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP4O75161 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP4O75161 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP4O75161 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHP4O75161 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
NPHP4O75161 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP4O75161 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP4O75161 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP4O75161 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP4O75161 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP4O75161 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
NPHP4O75161 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC21.49■■□□□ 1.03
NPHP4O75161 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms