Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
SHOX2O60902 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.73■□□□□ 0.11
SHOX2O60902 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.73■□□□□ 0.11
SHOX2O60902 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 PTCHD3P3-201ENST00000403073 906 ntBASIC15.73■□□□□ 0.11
SHOX2O60902 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC15.73■□□□□ 0.11
SHOX2O60902 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
SHOX2O60902 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC15.73■□□□□ 0.11
SHOX2O60902 RBSN-204ENST00000449050 903 ntTSL 2 BASIC15.73■□□□□ 0.11
SHOX2O60902 KRT17P6-201ENST00000453795 1220 ntBASIC15.73■□□□□ 0.11
SHOX2O60902 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC15.73■□□□□ 0.11
SHOX2O60902 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC15.73■□□□□ 0.11
SHOX2O60902 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC15.73■□□□□ 0.11
SHOX2O60902 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.73■□□□□ 0.11
SHOX2O60902 AP002414.4-201ENST00000589764 1148 ntBASIC15.73■□□□□ 0.11
SHOX2O60902 Z69720.1-201ENST00000601483 472 ntBASIC15.73■□□□□ 0.11
SHOX2O60902 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC15.73■□□□□ 0.11
SHOX2O60902 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC15.73■□□□□ 0.11
SHOX2O60902 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 AC005562.1-201ENST00000583030 3219 ntBASIC15.73■□□□□ 0.11
SHOX2O60902 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
SHOX2O60902 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SHOX2O60902 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC15.73■□□□□ 0.11
SHOX2O60902 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC15.72■□□□□ 0.11
SHOX2O60902 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
SHOX2O60902 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
SHOX2O60902 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.72■□□□□ 0.11
SHOX2O60902 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
SHOX2O60902 BET1L-202ENST00000332865 533 ntTSL 5 BASIC15.72■□□□□ 0.11
SHOX2O60902 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
SHOX2O60902 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.72■□□□□ 0.11
SHOX2O60902 CIB2-208ENST00000560618 804 ntTSL 2 BASIC15.72■□□□□ 0.11
SHOX2O60902 AP000845.1-201ENST00000581677 2131 ntBASIC15.72■□□□□ 0.11
SHOX2O60902 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC15.72■□□□□ 0.11
SHOX2O60902 AL589182.2-201ENST00000619332 1049 ntBASIC15.72■□□□□ 0.11
SHOX2O60902 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
SHOX2O60902 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.72■□□□□ 0.11
SHOX2O60902 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
SHOX2O60902 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
SHOX2O60902 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.72■□□□□ 0.11
SHOX2O60902 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
SHOX2O60902 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
SHOX2O60902 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.72■□□□□ 0.11
SHOX2O60902 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.72■□□□□ 0.11
SHOX2O60902 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
SHOX2O60902 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.72■□□□□ 0.11
SHOX2O60902 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SHOX2O60902 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC15.72■□□□□ 0.11
SHOX2O60902 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
SHOX2O60902 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC15.71■□□□□ 0.11
SHOX2O60902 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 TNN-203ENST00000622870 3719 ntTSL 5 BASIC15.71■□□□□ 0.11
SHOX2O60902 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 AC129492.6-201ENST00000611383 1305 ntBASIC15.71■□□□□ 0.11
SHOX2O60902 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
SHOX2O60902 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SHOX2O60902 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms