Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
MSH4O15457 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.53■□□□□ 0.4
MSH4O15457 AC132938.2-201ENST00000579188 680 ntBASIC17.53■□□□□ 0.4
MSH4O15457 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.53■□□□□ 0.4
MSH4O15457 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.53■□□□□ 0.4
MSH4O15457 AC107373.2-201ENST00000607735 490 ntBASIC17.53■□□□□ 0.4
MSH4O15457 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.53■□□□□ 0.4
MSH4O15457 AL591163.1-201ENST00000641757 987 ntBASIC17.53■□□□□ 0.4
MSH4O15457 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH4O15457 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.53■□□□□ 0.4
MSH4O15457 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSH4O15457 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH4O15457 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
MSH4O15457 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSH4O15457 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.53■□□□□ 0.4
MSH4O15457 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSH4O15457 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.53■□□□□ 0.4
MSH4O15457 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH4O15457 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH4O15457 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH4O15457 AC136621.1-201ENST00000624017 2304 ntBASIC17.53■□□□□ 0.4
MSH4O15457 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.53■□□□□ 0.4
MSH4O15457 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
MSH4O15457 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
MSH4O15457 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH4O15457 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSH4O15457 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSH4O15457 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
MSH4O15457 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSH4O15457 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSH4O15457 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSH4O15457 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.52■□□□□ 0.4
MSH4O15457 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
MSH4O15457 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.52■□□□□ 0.4
MSH4O15457 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSH4O15457 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.52■□□□□ 0.4
MSH4O15457 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSH4O15457 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
MSH4O15457 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSH4O15457 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.52■□□□□ 0.4
MSH4O15457 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSH4O15457 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSH4O15457 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSH4O15457 C1QBPP1-201ENST00000400117 770 ntBASIC17.52■□□□□ 0.4
MSH4O15457 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC17.52■□□□□ 0.4
MSH4O15457 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.52■□□□□ 0.4
MSH4O15457 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.52■□□□□ 0.4
MSH4O15457 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC17.52■□□□□ 0.4
MSH4O15457 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
MSH4O15457 GPR39-203ENST00000622084 900 ntTSL 5 BASIC17.52■□□□□ 0.4
MSH4O15457 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MSH4O15457 KRT8P22-201ENST00000562317 1415 ntBASIC17.52■□□□□ 0.4
MSH4O15457 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MSH4O15457 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
MSH4O15457 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
MSH4O15457 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
MSH4O15457 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
MSH4O15457 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.52■□□□□ 0.39
MSH4O15457 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
MSH4O15457 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
MSH4O15457 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
MSH4O15457 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC17.51■□□□□ 0.39
MSH4O15457 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 AC105917.1-201ENST00000506637 2539 ntBASIC17.51■□□□□ 0.39
MSH4O15457 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.51■□□□□ 0.39
MSH4O15457 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
MSH4O15457 SUN1-204ENST00000403868 978 ntTSL 2 BASIC17.51■□□□□ 0.39
MSH4O15457 AL512384.1-201ENST00000406683 331 ntBASIC17.51■□□□□ 0.39
MSH4O15457 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.51■□□□□ 0.39
MSH4O15457 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17.51■□□□□ 0.39
MSH4O15457 PFN2-205ENST00000461868 613 ntTSL 2 BASIC17.51■□□□□ 0.39
MSH4O15457 AC011495.1-201ENST00000498085 584 ntBASIC17.51■□□□□ 0.39
MSH4O15457 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC17.51■□□□□ 0.39
MSH4O15457 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
MSH4O15457 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC17.51■□□□□ 0.39
MSH4O15457 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.51■□□□□ 0.39
MSH4O15457 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.51■□□□□ 0.39
MSH4O15457 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.51■□□□□ 0.39
MSH4O15457 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.51■□□□□ 0.39
MSH4O15457 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.51■□□□□ 0.39
MSH4O15457 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.51■□□□□ 0.39
MSH4O15457 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.51■□□□□ 0.39
MSH4O15457 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
MSH4O15457 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC17.51■□□□□ 0.39
MSH4O15457 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms