Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 AJ011931.1-201ENST00000618749 2492 ntBASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 AC005089.1-201ENST00000619486 2241 ntBASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
TRIM49D1C9J1S8 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 TFAMP1-201ENST00000412727 736 ntBASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 AL139010.1-201ENST00000454878 894 ntBASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 AC009078.2-202ENST00000463353 338 ntBASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 HNRNPUP1-201ENST00000554987 333 ntBASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 AC097359.3-201ENST00000603982 1210 ntBASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 ZBED1P1-201ENST00000502364 1930 ntBASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
TRIM49D1C9J1S8 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 AL355306.1-201ENST00000415580 579 ntBASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 AL671277.1-201ENST00000429656 993 ntBASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC15.77■□□□□ 0.12
TRIM49D1C9J1S8 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms