Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 BEND3P1-201ENST00000421591 1944 ntBASIC14.92□□□□□ -0.02
AP4S1Q9Y587 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 AL359183.1-201ENST00000623796 2132 ntBASIC14.92□□□□□ -0.02
AP4S1Q9Y587 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 AL031133.1-201ENST00000406807 723 ntBASIC14.92□□□□□ -0.02
AP4S1Q9Y587 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 MIR3180-1-201ENST00000580374 94 ntBASIC14.92□□□□□ -0.02
AP4S1Q9Y587 MIR3180-3-201ENST00000584616 94 ntBASIC14.92□□□□□ -0.02
AP4S1Q9Y587 IGHV3OR16-7-201ENST00000604106 360 ntBASIC14.92□□□□□ -0.02
AP4S1Q9Y587 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
AP4S1Q9Y587 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 PTENP1-202ENST00000532280 3996 ntBASIC14.91□□□□□ -0.02
AP4S1Q9Y587 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 HMGA1P7-201ENST00000406908 502 ntBASIC14.91□□□□□ -0.02
AP4S1Q9Y587 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 DUSP5P1-201ENST00000441325 1139 ntBASIC14.91□□□□□ -0.02
AP4S1Q9Y587 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 AC006557.2-201ENST00000592985 1240 ntBASIC14.91□□□□□ -0.02
AP4S1Q9Y587 AC116407.4-201ENST00000623319 1061 ntBASIC14.91□□□□□ -0.02
AP4S1Q9Y587 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 AC136759.1-202ENST00000530858 2194 ntBASIC14.91□□□□□ -0.02
AP4S1Q9Y587 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
AP4S1Q9Y587 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.9□□□□□ -0.02
AP4S1Q9Y587 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
AP4S1Q9Y587 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
AP4S1Q9Y587 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
AP4S1Q9Y587 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
AP4S1Q9Y587 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
AP4S1Q9Y587 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC14.9□□□□□ -0.02
AP4S1Q9Y587 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms