Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 MIR3687-2-201ENST00000577708 61 ntBASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 AC004835.2-201ENST00000603762 682 ntBASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 MIR3687-1-201ENST00000614492 61 ntBASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 AC007967.4-201ENST00000614700 386 ntBASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 AC126365.1-201ENST00000578585 1514 ntBASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HIF3AQ9Y2N7 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 AC009093.7-201ENST00000623853 1223 ntBASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 AL035456.1-201ENST00000456064 1369 ntBASIC14.22□□□□□ -0.13
HIF3AQ9Y2N7 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.21□□□□□ -0.13
HIF3AQ9Y2N7 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms