Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 TCAF2P1-201ENST00000291129 2421 ntBASIC12.76□□□□□ -0.37
FOXA2Q9Y261 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 SPDYE7P-202ENST00000420373 878 ntBASIC12.76□□□□□ -0.37
FOXA2Q9Y261 AL645939.2-201ENST00000427340 991 ntBASIC12.76□□□□□ -0.37
FOXA2Q9Y261 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 AL450472.2-201ENST00000603663 1156 ntBASIC12.76□□□□□ -0.37
FOXA2Q9Y261 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 AP3S2-216ENST00000617003 1561 ntBASIC12.76□□□□□ -0.37
FOXA2Q9Y261 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC12.76□□□□□ -0.37
FOXA2Q9Y261 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 PARN-202ENST00000420015 2360 ntTSL 2 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC12.76□□□□□ -0.37
FOXA2Q9Y261 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 AL353705.2-201ENST00000428243 662 ntBASIC12.75□□□□□ -0.37
FOXA2Q9Y261 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 CCDC74BP1-201ENST00000508880 1123 ntBASIC12.75□□□□□ -0.37
FOXA2Q9Y261 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 GATD1-206ENST00000526325 756 ntTSL 5 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 AC026979.3-201ENST00000607315 403 ntBASIC12.75□□□□□ -0.37
FOXA2Q9Y261 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 AP001059.3-201ENST00000619053 235 ntBASIC12.75□□□□□ -0.37
FOXA2Q9Y261 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 AC009090.5-201ENST00000624886 2285 ntBASIC12.75□□□□□ -0.37
FOXA2Q9Y261 LINC00628-201ENST00000628516 1289 ntBASIC12.75□□□□□ -0.37
FOXA2Q9Y261 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC12.75□□□□□ -0.37
FOXA2Q9Y261 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
FOXA2Q9Y261 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms