Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NUP88Q99567 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NUP88Q99567 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
NUP88Q99567 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.39■□□□□ 0.54
NUP88Q99567 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
NUP88Q99567 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
NUP88Q99567 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC18.39■□□□□ 0.54
NUP88Q99567 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
NUP88Q99567 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NUP88Q99567 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NUP88Q99567 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.39■□□□□ 0.53
NUP88Q99567 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.39■□□□□ 0.53
NUP88Q99567 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.39■□□□□ 0.53
NUP88Q99567 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP88Q99567 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP88Q99567 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
NUP88Q99567 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP88Q99567 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC18.39■□□□□ 0.53
NUP88Q99567 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC18.39■□□□□ 0.53
NUP88Q99567 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC18.39■□□□□ 0.53
NUP88Q99567 HNRNPA1P13-201ENST00000510646 963 ntBASIC18.39■□□□□ 0.53
NUP88Q99567 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.39■□□□□ 0.53
NUP88Q99567 FUZ-207ENST00000526575 482 ntTSL 4 BASIC18.39■□□□□ 0.53
NUP88Q99567 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC18.39■□□□□ 0.53
NUP88Q99567 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC18.39■□□□□ 0.53
NUP88Q99567 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.39■□□□□ 0.53
NUP88Q99567 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC18.39■□□□□ 0.53
NUP88Q99567 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP88Q99567 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.39■□□□□ 0.53
NUP88Q99567 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
NUP88Q99567 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
NUP88Q99567 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.39■□□□□ 0.53
NUP88Q99567 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP88Q99567 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC18.39■□□□□ 0.53
NUP88Q99567 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC18.39■□□□□ 0.53
NUP88Q99567 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC18.39■□□□□ 0.53
NUP88Q99567 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NUP88Q99567 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
NUP88Q99567 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
NUP88Q99567 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
NUP88Q99567 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 MTHFR-217ENST00000641820 1569 ntBASIC18.38■□□□□ 0.53
NUP88Q99567 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.38■□□□□ 0.53
NUP88Q99567 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC18.38■□□□□ 0.53
NUP88Q99567 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC18.38■□□□□ 0.53
NUP88Q99567 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
NUP88Q99567 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
NUP88Q99567 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
NUP88Q99567 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 FAM86LP-201ENST00000478302 853 ntBASIC18.38■□□□□ 0.53
NUP88Q99567 SLED1-202ENST00000512051 380 ntBASIC18.38■□□□□ 0.53
NUP88Q99567 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC18.38■□□□□ 0.53
NUP88Q99567 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC18.38■□□□□ 0.53
NUP88Q99567 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.38■□□□□ 0.53
NUP88Q99567 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.38■□□□□ 0.53
NUP88Q99567 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC18.38■□□□□ 0.53
NUP88Q99567 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
NUP88Q99567 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC18.38■□□□□ 0.53
NUP88Q99567 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.38■□□□□ 0.53
NUP88Q99567 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC18.38■□□□□ 0.53
NUP88Q99567 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
NUP88Q99567 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
NUP88Q99567 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
NUP88Q99567 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
NUP88Q99567 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.38■□□□□ 0.53
NUP88Q99567 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.38■□□□□ 0.53
NUP88Q99567 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC18.38■□□□□ 0.53
NUP88Q99567 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
NUP88Q99567 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.38■□□□□ 0.53
NUP88Q99567 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
NUP88Q99567 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUP88Q99567 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP88Q99567 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP88Q99567 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP88Q99567 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP88Q99567 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUP88Q99567 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18.37■□□□□ 0.53
NUP88Q99567 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
NUP88Q99567 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP88Q99567 MIR648-201ENST00000385046 94 ntBASIC18.37■□□□□ 0.53
NUP88Q99567 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUP88Q99567 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC18.37■□□□□ 0.53
NUP88Q99567 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC18.37■□□□□ 0.53
NUP88Q99567 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.37■□□□□ 0.53
NUP88Q99567 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
NUP88Q99567 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.37■□□□□ 0.53
NUP88Q99567 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms