Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
KRT28Q7Z3Y7 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
KRT28Q7Z3Y7 IQSEC3P1-201ENST00000538799 536 ntBASIC20.91■□□□□ 0.94
KRT28Q7Z3Y7 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
KRT28Q7Z3Y7 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC20.91■□□□□ 0.94
KRT28Q7Z3Y7 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC20.91■□□□□ 0.94
KRT28Q7Z3Y7 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC20.91■□□□□ 0.94
KRT28Q7Z3Y7 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.91■□□□□ 0.94
KRT28Q7Z3Y7 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC20.91■□□□□ 0.94
KRT28Q7Z3Y7 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
KRT28Q7Z3Y7 FLJ38576-201ENST00000623820 2459 ntBASIC20.91■□□□□ 0.94
KRT28Q7Z3Y7 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
KRT28Q7Z3Y7 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
KRT28Q7Z3Y7 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 AC004923.1-202ENST00000642106 209 ntBASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT28Q7Z3Y7 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
KRT28Q7Z3Y7 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
KRT28Q7Z3Y7 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
KRT28Q7Z3Y7 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
KRT28Q7Z3Y7 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
KRT28Q7Z3Y7 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
KRT28Q7Z3Y7 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
KRT28Q7Z3Y7 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
KRT28Q7Z3Y7 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 AL136309.1-201ENST00000403917 691 ntBASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 AC234782.1-201ENST00000451950 919 ntBASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 AC022616.1-201ENST00000518688 554 ntBASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 CSH2-206ENST00000560142 749 ntTSL 5 BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 AL805961.1-203ENST00000641078 1258 ntBASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 AC012313.1-201ENST00000593393 3059 ntBASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
KRT28Q7Z3Y7 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 SLC16A6P1-201ENST00000413214 1059 ntBASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 AC104784.1-201ENST00000473096 294 ntBASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 AC106794.1-201ENST00000506935 792 ntBASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 RN7SL163P-201ENST00000583100 276 ntBASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
KRT28Q7Z3Y7 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms