Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AL157791.1-201ENST00000553667 1699 ntBASIC16.22■□□□□ 0.19
CHD9Q3L8U1 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 AC130709.1-201ENST00000484779 1212 ntBASIC16.22■□□□□ 0.19
CHD9Q3L8U1 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 AC025271.4-201ENST00000621477 1726 ntBASIC16.22■□□□□ 0.19
CHD9Q3L8U1 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 REXO1L5P-201ENST00000622260 2098 ntBASIC16.21■□□□□ 0.19
CHD9Q3L8U1 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CHD9Q3L8U1 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
CHD9Q3L8U1 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.21■□□□□ 0.18
CHD9Q3L8U1 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
CHD9Q3L8U1 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CHD9Q3L8U1 AC009090.5-201ENST00000624886 2285 ntBASIC16.21■□□□□ 0.18
CHD9Q3L8U1 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 HLA-J-204ENST00000495278 958 ntBASIC16.2■□□□□ 0.18
CHD9Q3L8U1 AP002803.1-201ENST00000528836 498 ntBASIC16.2■□□□□ 0.18
CHD9Q3L8U1 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 CLUHP2-201ENST00000426660 1303 ntBASIC16.2■□□□□ 0.18
CHD9Q3L8U1 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 OR2K2-202ENST00000374428 1038 ntBASIC16.2■□□□□ 0.18
CHD9Q3L8U1 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 AL139008.1-201ENST00000437894 228 ntBASIC16.2■□□□□ 0.18
CHD9Q3L8U1 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 STUB1-204ENST00000564370 875 ntTSL 2 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 AC011840.2-201ENST00000563063 1520 ntBASIC16.2■□□□□ 0.18
CHD9Q3L8U1 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.2■□□□□ 0.18
CHD9Q3L8U1 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 SNORD3B-2-202ENST00000571722 791 ntBASIC16.2■□□□□ 0.18
CHD9Q3L8U1 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 MIR6858-201ENST00000620733 67 ntBASIC16.2■□□□□ 0.18
CHD9Q3L8U1 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CHD9Q3L8U1 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHD9Q3L8U1 AC020910.5-201ENST00000623668 1865 ntBASIC16.19■□□□□ 0.18
CHD9Q3L8U1 AP003680.1-201ENST00000598970 3660 ntBASIC16.19■□□□□ 0.18
CHD9Q3L8U1 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CHD9Q3L8U1 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CHD9Q3L8U1 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
CHD9Q3L8U1 SOD2-202ENST00000367054 815 ntTSL 2 BASIC16.19■□□□□ 0.18
CHD9Q3L8U1 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.19■□□□□ 0.18
CHD9Q3L8U1 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms