Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HTTP42858 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HTTP42858 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HTTP42858 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
HTTP42858 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC17.21■□□□□ 0.35
HTTP42858 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
HTTP42858 NAP1L6-202ENST00000641404 1222 ntBASIC17.21■□□□□ 0.35
HTTP42858 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HTTP42858 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
HTTP42858 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HTTP42858 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC17.21■□□□□ 0.35
HTTP42858 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HTTP42858 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC17.21■□□□□ 0.35
HTTP42858 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC17.21■□□□□ 0.35
HTTP42858 AC079112.1-201ENST00000454972 939 ntBASIC17.21■□□□□ 0.35
HTTP42858 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
HTTP42858 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC17.21■□□□□ 0.35
HTTP42858 AL161773.1-201ENST00000624845 863 ntBASIC17.21■□□□□ 0.35
HTTP42858 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.21■□□□□ 0.35
HTTP42858 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HTTP42858 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.34
HTTP42858 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
HTTP42858 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
HTTP42858 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
HTTP42858 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
HTTP42858 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC17.2■□□□□ 0.34
HTTP42858 MST1L-201ENST00000442552 2185 ntBASIC17.2■□□□□ 0.34
HTTP42858 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HTTP42858 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.2■□□□□ 0.34
HTTP42858 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.2■□□□□ 0.34
HTTP42858 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC17.2■□□□□ 0.34
HTTP42858 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HTTP42858 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC17.2■□□□□ 0.34
HTTP42858 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HTTP42858 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC17.2■□□□□ 0.34
HTTP42858 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HTTP42858 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.2■□□□□ 0.34
HTTP42858 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HTTP42858 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC17.2■□□□□ 0.34
HTTP42858 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HTTP42858 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
HTTP42858 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HTTP42858 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HTTP42858 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HTTP42858 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.2■□□□□ 0.34
HTTP42858 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HTTP42858 RBM38-204ENST00000371219 760 ntTSL 2 BASIC17.2■□□□□ 0.34
HTTP42858 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC17.2■□□□□ 0.34
HTTP42858 AL357563.1-201ENST00000404728 395 ntBASIC17.2■□□□□ 0.34
HTTP42858 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC17.2■□□□□ 0.34
HTTP42858 AC130709.1-201ENST00000484779 1212 ntBASIC17.2■□□□□ 0.34
HTTP42858 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.2■□□□□ 0.34
HTTP42858 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.2■□□□□ 0.34
HTTP42858 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HTTP42858 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HTTP42858 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HTTP42858 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HTTP42858 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.19■□□□□ 0.34
HTTP42858 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.19■□□□□ 0.34
HTTP42858 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC17.19■□□□□ 0.34
HTTP42858 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC17.19■□□□□ 0.34
HTTP42858 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC17.19■□□□□ 0.34
HTTP42858 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC17.19■□□□□ 0.34
HTTP42858 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HTTP42858 AC025262.2-201ENST00000623975 1056 ntBASIC17.19■□□□□ 0.34
HTTP42858 AC073911.3-201ENST00000624401 631 ntBASIC17.19■□□□□ 0.34
HTTP42858 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 LRRC59-203ENST00000576448 1531 ntBASIC17.19■□□□□ 0.34
HTTP42858 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC17.19■□□□□ 0.34
HTTP42858 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC17.19■□□□□ 0.34
HTTP42858 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC17.19■□□□□ 0.34
HTTP42858 AL031713.1-201ENST00000564813 661 ntBASIC17.19■□□□□ 0.34
HTTP42858 SNORD3B-2-202ENST00000571722 791 ntBASIC17.19■□□□□ 0.34
HTTP42858 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC17.19■□□□□ 0.34
HTTP42858 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC17.19■□□□□ 0.34
HTTP42858 AC006158.1-201ENST00000610661 249 ntBASIC17.19■□□□□ 0.34
HTTP42858 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC17.19■□□□□ 0.34
HTTP42858 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 CLUHP2-201ENST00000426660 1303 ntBASIC17.19■□□□□ 0.34
HTTP42858 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.19■□□□□ 0.34
HTTP42858 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HTTP42858 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.19■□□□□ 0.34
HTTP42858 RN7SL258P-201ENST00000478664 300 ntBASIC17.19■□□□□ 0.34
HTTP42858 DNM1P51-201ENST00000558149 522 ntBASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms