Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.86□□□□□ -0.03
SOX3P41225 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SOX3P41225 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SOX3P41225 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.86□□□□□ -0.03
SOX3P41225 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.86□□□□□ -0.03
SOX3P41225 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.86□□□□□ -0.03
SOX3P41225 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.86□□□□□ -0.03
SOX3P41225 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.86□□□□□ -0.03
SOX3P41225 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC14.86□□□□□ -0.03
SOX3P41225 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.86□□□□□ -0.03
SOX3P41225 MIR4745-201ENST00000577608 62 ntBASIC14.86□□□□□ -0.03
SOX3P41225 MIR3197-201ENST00000582241 73 ntBASIC14.86□□□□□ -0.03
SOX3P41225 AP003680.1-201ENST00000598970 3660 ntBASIC14.86□□□□□ -0.03
SOX3P41225 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC14.86□□□□□ -0.03
SOX3P41225 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.86□□□□□ -0.03
SOX3P41225 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
SOX3P41225 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SOX3P41225 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.86□□□□□ -0.03
SOX3P41225 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SOX3P41225 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SOX3P41225 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.86□□□□□ -0.03
SOX3P41225 AL136982.4-201ENST00000437689 1740 ntBASIC14.86□□□□□ -0.03
SOX3P41225 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC14.86□□□□□ -0.03
SOX3P41225 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SOX3P41225 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
SOX3P41225 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 AC023157.3-201ENST00000619086 2088 ntBASIC14.85□□□□□ -0.03
SOX3P41225 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.85□□□□□ -0.03
SOX3P41225 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.85□□□□□ -0.03
SOX3P41225 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
SOX3P41225 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
SOX3P41225 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.85□□□□□ -0.03
SOX3P41225 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.85□□□□□ -0.03
SOX3P41225 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.85□□□□□ -0.03
SOX3P41225 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.85□□□□□ -0.03
SOX3P41225 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.85□□□□□ -0.03
SOX3P41225 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.85□□□□□ -0.03
SOX3P41225 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.85□□□□□ -0.03
SOX3P41225 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.85□□□□□ -0.03
SOX3P41225 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.85□□□□□ -0.03
SOX3P41225 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.85□□□□□ -0.03
SOX3P41225 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.85□□□□□ -0.03
SOX3P41225 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.85□□□□□ -0.03
SOX3P41225 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.85□□□□□ -0.03
SOX3P41225 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.85□□□□□ -0.03
SOX3P41225 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SOX3P41225 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SOX3P41225 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SOX3P41225 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
SOX3P41225 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.84□□□□□ -0.03
SOX3P41225 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
SOX3P41225 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SOX3P41225 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
SOX3P41225 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.84□□□□□ -0.03
SOX3P41225 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.84□□□□□ -0.03
SOX3P41225 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.84□□□□□ -0.03
SOX3P41225 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SOX3P41225 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.84□□□□□ -0.03
SOX3P41225 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.84□□□□□ -0.03
SOX3P41225 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SOX3P41225 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.84□□□□□ -0.03
SOX3P41225 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.84□□□□□ -0.03
SOX3P41225 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
SOX3P41225 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.84□□□□□ -0.03
SOX3P41225 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.84□□□□□ -0.03
SOX3P41225 TSPY16P-201ENST00000449843 468 ntBASIC14.84□□□□□ -0.03
SOX3P41225 AC245100.5-201ENST00000452108 331 ntBASIC14.84□□□□□ -0.03
SOX3P41225 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.84□□□□□ -0.03
SOX3P41225 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.84□□□□□ -0.03
SOX3P41225 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SOX3P41225 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms