Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
BRCA1P38398 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
BRCA1P38398 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC18.55■□□□□ 0.56
BRCA1P38398 AC018463.1-201ENST00000456674 917 ntBASIC18.55■□□□□ 0.56
BRCA1P38398 CDC23-208ENST00000505120 455 ntTSL 3 BASIC18.55■□□□□ 0.56
BRCA1P38398 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
BRCA1P38398 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC18.55■□□□□ 0.56
BRCA1P38398 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
BRCA1P38398 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
BRCA1P38398 AC124067.4-201ENST00000519691 2379 ntBASIC18.55■□□□□ 0.56
BRCA1P38398 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
BRCA1P38398 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
BRCA1P38398 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
BRCA1P38398 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
BRCA1P38398 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
BRCA1P38398 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 PSMD4P1-201ENST00000433951 1109 ntBASIC18.54■□□□□ 0.56
BRCA1P38398 MRPL22P1-201ENST00000505398 616 ntBASIC18.54■□□□□ 0.56
BRCA1P38398 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC18.54■□□□□ 0.56
BRCA1P38398 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 C2orf69P1-201ENST00000563532 1093 ntBASIC18.54■□□□□ 0.56
BRCA1P38398 AL118516.1-201ENST00000564152 670 ntBASIC18.54■□□□□ 0.56
BRCA1P38398 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
BRCA1P38398 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC18.54■□□□□ 0.56
BRCA1P38398 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC18.54■□□□□ 0.56
BRCA1P38398 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
BRCA1P38398 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC18.54■□□□□ 0.56
BRCA1P38398 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.54■□□□□ 0.56
BRCA1P38398 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
BRCA1P38398 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC18.54■□□□□ 0.56
BRCA1P38398 AMT-239ENST00000636865 1914 ntTSL 5 BASIC18.54■□□□□ 0.56
BRCA1P38398 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC18.54■□□□□ 0.56
BRCA1P38398 REEP5-205ENST00000504247 480 ntTSL 5 BASIC18.54■□□□□ 0.56
BRCA1P38398 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC18.54■□□□□ 0.56
BRCA1P38398 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC18.54■□□□□ 0.56
BRCA1P38398 ALG1L13P-202ENST00000519320 584 ntBASIC18.54■□□□□ 0.56
BRCA1P38398 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC18.54■□□□□ 0.56
BRCA1P38398 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
BRCA1P38398 PHBP15-201ENST00000574228 665 ntBASIC18.54■□□□□ 0.56
BRCA1P38398 AC107464.3-201ENST00000609172 737 ntBASIC18.54■□□□□ 0.56
BRCA1P38398 AC084781.1-201ENST00000613737 656 ntBASIC18.54■□□□□ 0.56
BRCA1P38398 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
BRCA1P38398 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
BRCA1P38398 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC18.54■□□□□ 0.56
BRCA1P38398 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.53■□□□□ 0.56
BRCA1P38398 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BRCA1P38398 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BRCA1P38398 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
BRCA1P38398 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BRCA1P38398 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BRCA1P38398 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC18.53■□□□□ 0.56
BRCA1P38398 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC18.53■□□□□ 0.56
BRCA1P38398 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC18.53■□□□□ 0.56
BRCA1P38398 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BRCA1P38398 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.53■□□□□ 0.56
BRCA1P38398 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
BRCA1P38398 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BRCA1P38398 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BRCA1P38398 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
BRCA1P38398 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BRCA1P38398 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BRCA1P38398 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
BRCA1P38398 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC18.52■□□□□ 0.56
BRCA1P38398 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
BRCA1P38398 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
BRCA1P38398 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
BRCA1P38398 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
BRCA1P38398 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.52■□□□□ 0.56
BRCA1P38398 MIR557-201ENST00000385239 98 ntBASIC18.52■□□□□ 0.56
BRCA1P38398 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
BRCA1P38398 HPGD-203ENST00000422112 805 ntTSL 2 BASIC18.52■□□□□ 0.56
BRCA1P38398 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
BRCA1P38398 AL627422.1-201ENST00000434104 580 ntBASIC18.52■□□□□ 0.56
BRCA1P38398 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
BRCA1P38398 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
BRCA1P38398 PUDPP3-201ENST00000445368 636 ntBASIC18.52■□□□□ 0.56
BRCA1P38398 CHCHD2P9-201ENST00000461726 456 ntBASIC18.52■□□□□ 0.56
BRCA1P38398 ORAOV1P1-201ENST00000503108 395 ntBASIC18.52■□□□□ 0.56
BRCA1P38398 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC18.52■□□□□ 0.56
BRCA1P38398 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
BRCA1P38398 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
BRCA1P38398 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC18.52■□□□□ 0.56
BRCA1P38398 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC18.52■□□□□ 0.56
BRCA1P38398 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC18.52■□□□□ 0.56
BRCA1P38398 AC005041.3-201ENST00000606287 649 ntBASIC18.52■□□□□ 0.56
BRCA1P38398 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms