Protein–RNA interactions for Protein: P13612

ITGA4, Integrin alpha-4, humanhuman

Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4P13612 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
ITGA4P13612 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
ITGA4P13612 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC17.26■□□□□ 0.35
ITGA4P13612 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
ITGA4P13612 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC17.26■□□□□ 0.35
ITGA4P13612 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.26■□□□□ 0.35
ITGA4P13612 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.26■□□□□ 0.35
ITGA4P13612 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
ITGA4P13612 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17.26■□□□□ 0.35
ITGA4P13612 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC17.26■□□□□ 0.35
ITGA4P13612 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 AC098850.1-201ENST00000419919 790 ntBASIC17.26■□□□□ 0.35
ITGA4P13612 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17.26■□□□□ 0.35
ITGA4P13612 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.26■□□□□ 0.35
ITGA4P13612 PHKG1P2-201ENST00000457537 863 ntBASIC17.26■□□□□ 0.35
ITGA4P13612 GIMAP3P-201ENST00000495150 836 ntBASIC17.26■□□□□ 0.35
ITGA4P13612 AC104596.2-201ENST00000512793 793 ntBASIC17.26■□□□□ 0.35
ITGA4P13612 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.26■□□□□ 0.35
ITGA4P13612 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.26■□□□□ 0.35
ITGA4P13612 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
ITGA4P13612 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
ITGA4P13612 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
ITGA4P13612 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.26■□□□□ 0.35
ITGA4P13612 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.26■□□□□ 0.35
ITGA4P13612 CTBP2P3-201ENST00000585629 1255 ntBASIC17.26■□□□□ 0.35
ITGA4P13612 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.26■□□□□ 0.35
ITGA4P13612 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
ITGA4P13612 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
ITGA4P13612 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
ITGA4P13612 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
ITGA4P13612 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
ITGA4P13612 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
ITGA4P13612 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
ITGA4P13612 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC17.25■□□□□ 0.35
ITGA4P13612 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
ITGA4P13612 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.25■□□□□ 0.35
ITGA4P13612 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
ITGA4P13612 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.25■□□□□ 0.35
ITGA4P13612 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.25■□□□□ 0.35
ITGA4P13612 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 AL512384.1-201ENST00000406683 331 ntBASIC17.25■□□□□ 0.35
ITGA4P13612 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.25■□□□□ 0.35
ITGA4P13612 RPL13P2-201ENST00000440687 659 ntBASIC17.25■□□□□ 0.35
ITGA4P13612 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.25■□□□□ 0.35
ITGA4P13612 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.25■□□□□ 0.35
ITGA4P13612 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.25■□□□□ 0.35
ITGA4P13612 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.25■□□□□ 0.35
ITGA4P13612 AC132938.2-201ENST00000579188 680 ntBASIC17.25■□□□□ 0.35
ITGA4P13612 IGHV3-72-202ENST00000621503 303 ntBASIC17.25■□□□□ 0.35
ITGA4P13612 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC17.25■□□□□ 0.35
ITGA4P13612 AL591163.1-201ENST00000641757 987 ntBASIC17.25■□□□□ 0.35
ITGA4P13612 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
ITGA4P13612 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
ITGA4P13612 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.25■□□□□ 0.35
ITGA4P13612 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
ITGA4P13612 CLK3P2-201ENST00000427566 1453 ntBASIC17.24■□□□□ 0.35
ITGA4P13612 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
ITGA4P13612 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.24■□□□□ 0.35
ITGA4P13612 AC069224.1-201ENST00000566372 1715 ntBASIC17.24■□□□□ 0.35
ITGA4P13612 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ITGA4P13612 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
ITGA4P13612 REXO1L1P-202ENST00000608646 1974 ntBASIC17.24■□□□□ 0.35
ITGA4P13612 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ITGA4P13612 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ITGA4P13612 AP002414.2-201ENST00000591780 3365 ntBASIC17.24■□□□□ 0.35
ITGA4P13612 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ITGA4P13612 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.24■□□□□ 0.35
ITGA4P13612 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
ITGA4P13612 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
ITGA4P13612 OR8S1-201ENST00000310194 1080 ntBASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms