Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 SURF4-203ENST00000371991 715 ntTSL 3 BASIC15.9■□□□□ 0.14
COL6A3P12111 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC15.9■□□□□ 0.14
COL6A3P12111 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.9■□□□□ 0.14
COL6A3P12111 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC15.9■□□□□ 0.14
COL6A3P12111 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC15.9■□□□□ 0.14
COL6A3P12111 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC15.9■□□□□ 0.14
COL6A3P12111 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.9■□□□□ 0.14
COL6A3P12111 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
COL6A3P12111 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 LRRC59-203ENST00000576448 1531 ntBASIC15.9■□□□□ 0.14
COL6A3P12111 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.9■□□□□ 0.14
COL6A3P12111 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC15.9■□□□□ 0.14
COL6A3P12111 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
COL6A3P12111 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.14
COL6A3P12111 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A3P12111 AF274858.1-201ENST00000406288 372 ntBASIC15.89■□□□□ 0.13
COL6A3P12111 AC010141.1-201ENST00000411585 623 ntBASIC15.89■□□□□ 0.13
COL6A3P12111 SLC25A15P1-201ENST00000456738 342 ntBASIC15.89■□□□□ 0.13
COL6A3P12111 SLC25A15P3-201ENST00000505530 290 ntBASIC15.89■□□□□ 0.13
COL6A3P12111 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC15.89■□□□□ 0.13
COL6A3P12111 MIR6769A-201ENST00000617340 73 ntBASIC15.89■□□□□ 0.13
COL6A3P12111 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.89■□□□□ 0.13
COL6A3P12111 MIEF1-215ENST00000637854 213 ntBASIC15.89■□□□□ 0.13
COL6A3P12111 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.89■□□□□ 0.13
COL6A3P12111 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A3P12111 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A3P12111 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A3P12111 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A3P12111 LINC02012-201ENST00000608206 1725 ntBASIC15.89■□□□□ 0.13
COL6A3P12111 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A3P12111 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.89■□□□□ 0.13
COL6A3P12111 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A3P12111 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
COL6A3P12111 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
COL6A3P12111 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
COL6A3P12111 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.89■□□□□ 0.13
COL6A3P12111 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC15.89■□□□□ 0.13
COL6A3P12111 AC113347.2-201ENST00000512350 279 ntBASIC15.89■□□□□ 0.13
COL6A3P12111 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC15.89■□□□□ 0.13
COL6A3P12111 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC15.89■□□□□ 0.13
COL6A3P12111 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A3P12111 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC15.89■□□□□ 0.13
COL6A3P12111 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A3P12111 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A3P12111 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
COL6A3P12111 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
COL6A3P12111 AC004408.2-201ENST00000623613 2777 ntBASIC15.89■□□□□ 0.13
COL6A3P12111 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A3P12111 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A3P12111 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC15.89■□□□□ 0.13
COL6A3P12111 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A3P12111 AP006248.1-201ENST00000610471 67 ntBASIC15.89■□□□□ 0.13
COL6A3P12111 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A3P12111 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL6A3P12111 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
COL6A3P12111 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A3P12111 TNXA-203ENST00000507684 2038 ntBASIC15.88■□□□□ 0.13
COL6A3P12111 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.88■□□□□ 0.13
COL6A3P12111 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A3P12111 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A3P12111 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.88■□□□□ 0.13
COL6A3P12111 AL139094.1-201ENST00000405549 1188 ntBASIC15.88■□□□□ 0.13
COL6A3P12111 CISD2-202ENST00000503643 808 ntTSL 2 BASIC15.88■□□□□ 0.13
COL6A3P12111 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
COL6A3P12111 AC092299.1-201ENST00000632679 757 ntBASIC15.88■□□□□ 0.13
COL6A3P12111 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.88■□□□□ 0.13
COL6A3P12111 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
COL6A3P12111 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A3P12111 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
COL6A3P12111 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A3P12111 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.88■□□□□ 0.13
COL6A3P12111 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC15.88■□□□□ 0.13
COL6A3P12111 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A3P12111 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A3P12111 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
COL6A3P12111 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.88■□□□□ 0.13
COL6A3P12111 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC15.88■□□□□ 0.13
COL6A3P12111 RNLS-203ENST00000437752 525 ntTSL 2 BASIC15.88■□□□□ 0.13
COL6A3P12111 CHCHD2P9-201ENST00000461726 456 ntBASIC15.88■□□□□ 0.13
COL6A3P12111 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
COL6A3P12111 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC15.88■□□□□ 0.13
COL6A3P12111 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
COL6A3P12111 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC15.88■□□□□ 0.13
COL6A3P12111 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A3P12111 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A3P12111 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.88■□□□□ 0.13
COL6A3P12111 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A3P12111 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL6A3P12111 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 HLA-DMA-203ENST00000395305 777 ntBASIC15.87■□□□□ 0.13
COL6A3P12111 FAM58BP-201ENST00000439056 645 ntBASIC15.87■□□□□ 0.13
COL6A3P12111 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms