Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.21■□□□□ 0.03
HOXC4P09017 SNX29P1-201ENST00000548357 1007 ntBASIC15.21■□□□□ 0.03
HOXC4P09017 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.21■□□□□ 0.03
HOXC4P09017 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.21■□□□□ 0.03
HOXC4P09017 AC132938.4-201ENST00000623835 848 ntBASIC15.21■□□□□ 0.03
HOXC4P09017 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.21■□□□□ 0.03
HOXC4P09017 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
HOXC4P09017 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HOXC4P09017 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
HOXC4P09017 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HOXC4P09017 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.21■□□□□ 0.03
HOXC4P09017 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
HOXC4P09017 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.21■□□□□ 0.03
HOXC4P09017 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
HOXC4P09017 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HOXC4P09017 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.21■□□□□ 0.03
HOXC4P09017 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
HOXC4P09017 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HOXC4P09017 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.21■□□□□ 0.02
HOXC4P09017 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HOXC4P09017 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HOXC4P09017 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HOXC4P09017 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HOXC4P09017 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.2■□□□□ 0.02
HOXC4P09017 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HOXC4P09017 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HOXC4P09017 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 AC007787.1-201ENST00000588095 1583 ntBASIC15.2■□□□□ 0.02
HOXC4P09017 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 AC022188.1-201ENST00000620960 1664 ntBASIC15.2■□□□□ 0.02
HOXC4P09017 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.2■□□□□ 0.02
HOXC4P09017 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 ANKRD19P-201ENST00000338192 862 ntBASIC15.2■□□□□ 0.02
HOXC4P09017 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC15.2■□□□□ 0.02
HOXC4P09017 ACTBP8-201ENST00000403258 1108 ntBASIC15.2■□□□□ 0.02
HOXC4P09017 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.2■□□□□ 0.02
HOXC4P09017 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC15.2■□□□□ 0.02
HOXC4P09017 FO681548.1-201ENST00000455617 1132 ntBASIC15.2■□□□□ 0.02
HOXC4P09017 FTH1P14-201ENST00000482930 551 ntBASIC15.2■□□□□ 0.02
HOXC4P09017 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC15.2■□□□□ 0.02
HOXC4P09017 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.2■□□□□ 0.02
HOXC4P09017 AC079316.1-201ENST00000548397 411 ntBASIC15.2■□□□□ 0.02
HOXC4P09017 GNRHR2-203ENST00000581100 1187 ntBASIC15.2■□□□□ 0.02
HOXC4P09017 MIR4259-201ENST00000584466 101 ntBASIC15.2■□□□□ 0.02
HOXC4P09017 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
HOXC4P09017 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.2■□□□□ 0.02
HOXC4P09017 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15.2■□□□□ 0.02
HOXC4P09017 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 AC079328.2-201ENST00000561241 3354 ntBASIC15.2■□□□□ 0.02
HOXC4P09017 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.2■□□□□ 0.02
HOXC4P09017 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.2■□□□□ 0.02
HOXC4P09017 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HOXC4P09017 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
HOXC4P09017 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.19■□□□□ 0.02
HOXC4P09017 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.19■□□□□ 0.02
HOXC4P09017 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 STX1A-203ENST00000395155 783 ntTSL 2 BASIC15.19■□□□□ 0.02
HOXC4P09017 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.19■□□□□ 0.02
HOXC4P09017 CNN2P8-201ENST00000421872 913 ntBASIC15.19■□□□□ 0.02
HOXC4P09017 C2orf27AP3-201ENST00000434123 579 ntBASIC15.19■□□□□ 0.02
HOXC4P09017 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC15.19■□□□□ 0.02
HOXC4P09017 CTBP2P5-201ENST00000454986 1264 ntBASIC15.19■□□□□ 0.02
HOXC4P09017 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.19■□□□□ 0.02
HOXC4P09017 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 AC106760.1-201ENST00000508690 800 ntBASIC15.19■□□□□ 0.02
HOXC4P09017 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.19■□□□□ 0.02
HOXC4P09017 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.19■□□□□ 0.02
HOXC4P09017 AC025279.2-201ENST00000569730 653 ntBASIC15.19■□□□□ 0.02
HOXC4P09017 RPS24-214ENST00000613865 538 ntTSL 5 BASIC15.19■□□□□ 0.02
HOXC4P09017 AL354718.3-201ENST00000616414 581 ntBASIC15.19■□□□□ 0.02
HOXC4P09017 CR382287.1-201ENST00000623954 586 ntBASIC15.19■□□□□ 0.02
HOXC4P09017 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HOXC4P09017 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.19■□□□□ 0.02
HOXC4P09017 AC105250.1-201ENST00000509378 2057 ntBASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms