Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
APOEP02649 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.51■□□□□ 0.23
APOEP02649 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
APOEP02649 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.51■□□□□ 0.23
APOEP02649 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.51■□□□□ 0.23
APOEP02649 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.51■□□□□ 0.23
APOEP02649 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
APOEP02649 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
APOEP02649 AC135586.1-201ENST00000539323 574 ntBASIC16.51■□□□□ 0.23
APOEP02649 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.51■□□□□ 0.23
APOEP02649 AC025048.3-201ENST00000590609 569 ntBASIC16.51■□□□□ 0.23
APOEP02649 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
APOEP02649 AC074044.1-201ENST00000609673 707 ntBASIC16.51■□□□□ 0.23
APOEP02649 AC008738.7-201ENST00000609744 511 ntBASIC16.51■□□□□ 0.23
APOEP02649 AC009118.2-201ENST00000613275 655 ntBASIC16.51■□□□□ 0.23
APOEP02649 AC005702.4-201ENST00000618393 416 ntBASIC16.51■□□□□ 0.23
APOEP02649 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC16.51■□□□□ 0.23
APOEP02649 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.51■□□□□ 0.23
APOEP02649 TK2-221ENST00000620035 5060 ntTSL 2 BASIC16.51■□□□□ 0.23
APOEP02649 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.51■□□□□ 0.23
APOEP02649 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.51■□□□□ 0.23
APOEP02649 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
APOEP02649 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
APOEP02649 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
APOEP02649 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
APOEP02649 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
APOEP02649 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.51■□□□□ 0.23
APOEP02649 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
APOEP02649 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
APOEP02649 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
APOEP02649 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
APOEP02649 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.5■□□□□ 0.23
APOEP02649 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.5■□□□□ 0.23
APOEP02649 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.5■□□□□ 0.23
APOEP02649 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.5■□□□□ 0.23
APOEP02649 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.5■□□□□ 0.23
APOEP02649 FAM207CP-201ENST00000443486 507 ntBASIC16.5■□□□□ 0.23
APOEP02649 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.5■□□□□ 0.23
APOEP02649 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.5■□□□□ 0.23
APOEP02649 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.5■□□□□ 0.23
APOEP02649 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
APOEP02649 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.5■□□□□ 0.23
APOEP02649 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.5■□□□□ 0.23
APOEP02649 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
APOEP02649 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
APOEP02649 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.5■□□□□ 0.23
APOEP02649 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.5■□□□□ 0.23
APOEP02649 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC16.5■□□□□ 0.23
APOEP02649 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.5■□□□□ 0.23
APOEP02649 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.5■□□□□ 0.23
APOEP02649 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.5■□□□□ 0.23
APOEP02649 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.5■□□□□ 0.23
APOEP02649 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
APOEP02649 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.49■□□□□ 0.23
APOEP02649 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.49■□□□□ 0.23
APOEP02649 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.49■□□□□ 0.23
APOEP02649 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
APOEP02649 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
APOEP02649 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.49■□□□□ 0.23
APOEP02649 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.49■□□□□ 0.23
APOEP02649 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.49■□□□□ 0.23
APOEP02649 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.49■□□□□ 0.23
APOEP02649 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.49■□□□□ 0.23
APOEP02649 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.49■□□□□ 0.23
APOEP02649 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.49■□□□□ 0.23
APOEP02649 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.49■□□□□ 0.23
APOEP02649 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.49■□□□□ 0.23
APOEP02649 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms