Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
SEMA3DO95025 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.12■□□□□ 0.01
SEMA3DO95025 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.12■□□□□ 0.01
SEMA3DO95025 CNN2P2-201ENST00000443536 909 ntBASIC15.12■□□□□ 0.01
SEMA3DO95025 CNN2P3-201ENST00000450201 906 ntBASIC15.12■□□□□ 0.01
SEMA3DO95025 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.12■□□□□ 0.01
SEMA3DO95025 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.12■□□□□ 0.01
SEMA3DO95025 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
SEMA3DO95025 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.12■□□□□ 0.01
SEMA3DO95025 AC015911.4-201ENST00000588022 1070 ntBASIC15.12■□□□□ 0.01
SEMA3DO95025 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.12■□□□□ 0.01
SEMA3DO95025 AL136317.3-201ENST00000618497 906 ntBASIC15.12■□□□□ 0.01
SEMA3DO95025 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
SEMA3DO95025 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.12■□□□□ 0.01
SEMA3DO95025 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SEMA3DO95025 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
SEMA3DO95025 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.12■□□□□ 0.01
SEMA3DO95025 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.12■□□□□ 0.01
SEMA3DO95025 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SEMA3DO95025 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.12■□□□□ 0.01
SEMA3DO95025 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.12■□□□□ 0.01
SEMA3DO95025 SSR4P1-203ENST00000599569 2260 ntBASIC15.12■□□□□ 0.01
SEMA3DO95025 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.11■□□□□ 0.01
SEMA3DO95025 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.11■□□□□ 0.01
SEMA3DO95025 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
SEMA3DO95025 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.11■□□□□ 0.01
SEMA3DO95025 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.11■□□□□ 0.01
SEMA3DO95025 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
SEMA3DO95025 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SEMA3DO95025 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
SEMA3DO95025 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SEMA3DO95025 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.11■□□□□ 0.01
SEMA3DO95025 AL080243.2-201ENST00000418783 582 ntBASIC15.11■□□□□ 0.01
SEMA3DO95025 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
SEMA3DO95025 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.11■□□□□ 0.01
SEMA3DO95025 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 SERBP1P3-201ENST00000459980 809 ntBASIC15.11■□□□□ 0.01
SEMA3DO95025 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.11■□□□□ 0.01
SEMA3DO95025 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.11■□□□□ 0.01
SEMA3DO95025 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.11■□□□□ 0.01
SEMA3DO95025 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.11■□□□□ 0.01
SEMA3DO95025 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.11■□□□□ 0.01
SEMA3DO95025 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.11■□□□□ 0.01
SEMA3DO95025 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SEMA3DO95025 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
SEMA3DO95025 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.11■□□□□ 0.01
SEMA3DO95025 AL589739.1-201ENST00000607720 493 ntBASIC15.11■□□□□ 0.01
SEMA3DO95025 AL691403.2-201ENST00000618460 490 ntBASIC15.11■□□□□ 0.01
SEMA3DO95025 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.11■□□□□ 0.01
SEMA3DO95025 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
SEMA3DO95025 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.11■□□□□ 0.01
SEMA3DO95025 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 AC087481.3-201ENST00000602886 1894 ntBASIC15.11■□□□□ 0.01
SEMA3DO95025 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.11■□□□□ 0.01
SEMA3DO95025 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
SEMA3DO95025 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
SEMA3DO95025 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
SEMA3DO95025 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SEMA3DO95025 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SEMA3DO95025 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.1■□□□□ 0.01
SEMA3DO95025 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.1■□□□□ 0.01
SEMA3DO95025 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms