Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
HDAC3O15379 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
HDAC3O15379 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.35■□□□□ 0.05
HDAC3O15379 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.35■□□□□ 0.05
HDAC3O15379 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
HDAC3O15379 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HDAC3O15379 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
HDAC3O15379 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.34■□□□□ 0.05
HDAC3O15379 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.34■□□□□ 0.05
HDAC3O15379 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.34■□□□□ 0.05
HDAC3O15379 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
HDAC3O15379 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.34■□□□□ 0.05
HDAC3O15379 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
HDAC3O15379 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
HDAC3O15379 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.34■□□□□ 0.05
HDAC3O15379 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 CYP4F24P-201ENST00000586049 1580 ntBASIC15.34■□□□□ 0.05
HDAC3O15379 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
HDAC3O15379 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
HDAC3O15379 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC15.34■□□□□ 0.05
HDAC3O15379 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.34■□□□□ 0.05
HDAC3O15379 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.34■□□□□ 0.05
HDAC3O15379 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.34■□□□□ 0.05
HDAC3O15379 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.34■□□□□ 0.05
HDAC3O15379 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
HDAC3O15379 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.34■□□□□ 0.05
HDAC3O15379 AL031008.1-201ENST00000619963 541 ntBASIC15.34■□□□□ 0.05
HDAC3O15379 AL691432.3-201ENST00000621860 400 ntBASIC15.34■□□□□ 0.05
HDAC3O15379 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
HDAC3O15379 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
HDAC3O15379 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.34■□□□□ 0.05
HDAC3O15379 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.34■□□□□ 0.05
HDAC3O15379 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
HDAC3O15379 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
HDAC3O15379 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.34■□□□□ 0.05
HDAC3O15379 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
HDAC3O15379 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HDAC3O15379 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
HDAC3O15379 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
HDAC3O15379 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
HDAC3O15379 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
HDAC3O15379 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
HDAC3O15379 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HDAC3O15379 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
HDAC3O15379 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HDAC3O15379 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.33■□□□□ 0.05
HDAC3O15379 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.33■□□□□ 0.05
HDAC3O15379 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.33■□□□□ 0.04
HDAC3O15379 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
HDAC3O15379 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.33■□□□□ 0.04
HDAC3O15379 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 FAM8A3P-201ENST00000427218 844 ntBASIC15.33■□□□□ 0.04
HDAC3O15379 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.33■□□□□ 0.04
HDAC3O15379 RNA5SP410-201ENST00000516285 106 ntBASIC15.33■□□□□ 0.04
HDAC3O15379 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.33■□□□□ 0.04
HDAC3O15379 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.33■□□□□ 0.04
HDAC3O15379 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.33■□□□□ 0.04
HDAC3O15379 RARRES2P8-201ENST00000566335 367 ntBASIC15.33■□□□□ 0.04
HDAC3O15379 AC018845.2-201ENST00000568326 409 ntBASIC15.33■□□□□ 0.04
HDAC3O15379 AP002472.1-201ENST00000577490 586 ntBASIC15.33■□□□□ 0.04
HDAC3O15379 AC097359.3-201ENST00000603982 1210 ntBASIC15.33■□□□□ 0.04
HDAC3O15379 Z83851.2-201ENST00000609564 659 ntBASIC15.33■□□□□ 0.04
HDAC3O15379 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
HDAC3O15379 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 OR2I1P-209ENST00000641730 5365 ntBASIC15.33■□□□□ 0.04
HDAC3O15379 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HDAC3O15379 WASH3P-207ENST00000560956 1394 ntBASIC15.33■□□□□ 0.04
HDAC3O15379 FO538757.1-201ENST00000623083 1397 ntBASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms