Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 MRPL22P1-201ENST00000505398 616 ntBASIC11.92□□□□□ -0.5
COL6A5A8TX70 AC008723.1-201ENST00000506922 207 ntBASIC11.92□□□□□ -0.5
COL6A5A8TX70 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 NAT9-220ENST00000582870 896 ntTSL 5 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 RN7SL470P-201ENST00000583069 259 ntBASIC11.92□□□□□ -0.5
COL6A5A8TX70 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 AC055811.3-201ENST00000584952 686 ntBASIC11.92□□□□□ -0.5
COL6A5A8TX70 GPR39-203ENST00000622084 900 ntTSL 5 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 PCDHB18P-201ENST00000524813 2368 ntBASIC11.92□□□□□ -0.5
COL6A5A8TX70 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 AC136759.1-202ENST00000530858 2194 ntBASIC11.92□□□□□ -0.5
COL6A5A8TX70 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
COL6A5A8TX70 POLL-217ENST00000628479 1953 ntTSL 5 BASIC11.92□□□□□ -0.5
COL6A5A8TX70 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 AC084262.1-201ENST00000567818 751 ntBASIC11.91□□□□□ -0.5
COL6A5A8TX70 AL451007.2-201ENST00000632004 563 ntBASIC11.91□□□□□ -0.5
COL6A5A8TX70 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 AMT-233ENST00000636522 1620 ntTSL 2 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 AC023906.1-201ENST00000486386 453 ntBASIC11.91□□□□□ -0.5
COL6A5A8TX70 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 AP003680.1-201ENST00000598970 3660 ntBASIC11.91□□□□□ -0.5
COL6A5A8TX70 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC11.91□□□□□ -0.5
COL6A5A8TX70 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
COL6A5A8TX70 AC239868.1-201ENST00000369385 493 ntBASIC11.9□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms