Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 RBPMS2P1-201ENST00000437762 623 ntBASIC12.78□□□□□ -0.36
FOXA2Q9Y261 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 ALG1L8P-201ENST00000533887 760 ntBASIC12.78□□□□□ -0.36
FOXA2Q9Y261 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 AC027612.4-201ENST00000605371 583 ntBASIC12.78□□□□□ -0.36
FOXA2Q9Y261 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA2Q9Y261 AC018892.3-201ENST00000623986 2499 ntBASIC12.78□□□□□ -0.36
FOXA2Q9Y261 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
FOXA2Q9Y261 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
FOXA2Q9Y261 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
FOXA2Q9Y261 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
FOXA2Q9Y261 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
FOXA2Q9Y261 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
FOXA2Q9Y261 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
FOXA2Q9Y261 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
FOXA2Q9Y261 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
FOXA2Q9Y261 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
FOXA2Q9Y261 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
FOXA2Q9Y261 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC12.77□□□□□ -0.36
FOXA2Q9Y261 MECR-202ENST00000373791 2416 ntTSL 2 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 AC127383.1-201ENST00000444697 1800 ntBASIC12.77□□□□□ -0.37
FOXA2Q9Y261 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 RPL30-202ENST00000396070 440 ntTSL 2 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 TSEN15P1-201ENST00000423257 515 ntBASIC12.77□□□□□ -0.37
FOXA2Q9Y261 FAM58DP-201ENST00000428076 619 ntBASIC12.77□□□□□ -0.37
FOXA2Q9Y261 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 DAD1-205ENST00000543337 501 ntTSL 3 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 RARRES2P9-201ENST00000565168 469 ntBASIC12.77□□□□□ -0.37
FOXA2Q9Y261 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 KRT8P44-201ENST00000441609 1350 ntBASIC12.77□□□□□ -0.37
FOXA2Q9Y261 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 AC126365.1-201ENST00000578585 1514 ntBASIC12.77□□□□□ -0.37
FOXA2Q9Y261 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 FAM45BP-202ENST00000592932 1624 ntBASIC12.77□□□□□ -0.37
FOXA2Q9Y261 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
FOXA2Q9Y261 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms