Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HMGB4Q8WW32 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 AC026410.3-201ENST00000514280 936 ntBASIC15.74■□□□□ 0.11
HMGB4Q8WW32 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 AC243960.2-201ENST00000600996 747 ntBASIC15.74■□□□□ 0.11
HMGB4Q8WW32 AC107373.2-201ENST00000607735 490 ntBASIC15.74■□□□□ 0.11
HMGB4Q8WW32 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 DRD5P1-201ENST00000456605 1438 ntBASIC15.74■□□□□ 0.11
HMGB4Q8WW32 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
HMGB4Q8WW32 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 RPL13AP20-201ENST00000459725 609 ntBASIC15.73■□□□□ 0.11
HMGB4Q8WW32 AC022137.2-201ENST00000503482 481 ntBASIC15.73■□□□□ 0.11
HMGB4Q8WW32 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 DERL2-202ENST00000570848 657 ntTSL 5 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 RN7SL560P-201ENST00000577943 264 ntBASIC15.73■□□□□ 0.11
HMGB4Q8WW32 AC093813.1-201ENST00000605066 256 ntBASIC15.73■□□□□ 0.11
HMGB4Q8WW32 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
HMGB4Q8WW32 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms