Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHROOM3Q8TF72 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHROOM3Q8TF72 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 NME2-201ENST00000393183 568 ntTSL 2 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHROOM3Q8TF72 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 SRD5A3P1-201ENST00000603021 949 ntBASIC16■□□□□ 0.15
SHROOM3Q8TF72 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 SNX12-206ENST00000622259 661 ntTSL 5 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
SHROOM3Q8TF72 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
SHROOM3Q8TF72 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 DBET-201ENST00000630918 3363 ntBASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 KRT18P43-201ENST00000469825 1281 ntBASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 AC135586.1-201ENST00000539323 574 ntBASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 AL645728.2-202ENST00000641679 227 ntBASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHROOM3Q8TF72 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 AC074338.1-201ENST00000416825 156 ntBASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 AL596257.1-201ENST00000641463 2694 ntBASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHROOM3Q8TF72 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 AC103702.1-201ENST00000548801 2630 ntBASIC15.97■□□□□ 0.15
SHROOM3Q8TF72 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms