Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP43Q70EL4 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
USP43Q70EL4 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP43Q70EL4 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP43Q70EL4 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
USP43Q70EL4 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP43Q70EL4 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
USP43Q70EL4 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP43Q70EL4 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
USP43Q70EL4 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
USP43Q70EL4 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
USP43Q70EL4 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.45□□□□□ -0.1
USP43Q70EL4 COL6A4P2-202ENST00000504443 2753 ntBASIC14.45□□□□□ -0.1
USP43Q70EL4 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
USP43Q70EL4 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
USP43Q70EL4 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.44□□□□□ -0.1
USP43Q70EL4 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.44□□□□□ -0.1
USP43Q70EL4 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 AC148477.5-201ENST00000625164 1645 ntBASIC14.44□□□□□ -0.1
USP43Q70EL4 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.44□□□□□ -0.1
USP43Q70EL4 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
USP43Q70EL4 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
USP43Q70EL4 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC14.44□□□□□ -0.1
USP43Q70EL4 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
USP43Q70EL4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
USP43Q70EL4 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.44□□□□□ -0.1
USP43Q70EL4 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
USP43Q70EL4 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 SOD2-201ENST00000337404 991 ntTSL 2 BASIC14.44□□□□□ -0.1
USP43Q70EL4 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
USP43Q70EL4 LINC00982-205ENST00000420957 435 ntBASIC14.44□□□□□ -0.1
USP43Q70EL4 AL020989.1-201ENST00000422979 469 ntBASIC14.44□□□□□ -0.1
USP43Q70EL4 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC14.44□□□□□ -0.1
USP43Q70EL4 SART3-203ENST00000546611 1184 ntBASIC14.44□□□□□ -0.1
USP43Q70EL4 AC034105.1-201ENST00000563488 319 ntBASIC14.44□□□□□ -0.1
USP43Q70EL4 AC040169.1-201ENST00000565382 521 ntBASIC14.44□□□□□ -0.1
USP43Q70EL4 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC14.44□□□□□ -0.1
USP43Q70EL4 MIR3687-2-201ENST00000577708 61 ntBASIC14.44□□□□□ -0.1
USP43Q70EL4 AC140113.2-201ENST00000604370 208 ntBASIC14.44□□□□□ -0.1
USP43Q70EL4 Z83851.2-201ENST00000609564 659 ntBASIC14.44□□□□□ -0.1
USP43Q70EL4 MIR3687-1-201ENST00000614492 61 ntBASIC14.44□□□□□ -0.1
USP43Q70EL4 AL691403.2-201ENST00000618460 490 ntBASIC14.44□□□□□ -0.1
USP43Q70EL4 AC008735.5-201ENST00000623544 497 ntBASIC14.44□□□□□ -0.1
USP43Q70EL4 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.44□□□□□ -0.1
USP43Q70EL4 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
USP43Q70EL4 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.44□□□□□ -0.1
USP43Q70EL4 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.44□□□□□ -0.1
USP43Q70EL4 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
USP43Q70EL4 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.44□□□□□ -0.1
USP43Q70EL4 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
USP43Q70EL4 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.44□□□□□ -0.1
USP43Q70EL4 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC14.44□□□□□ -0.1
USP43Q70EL4 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USP43Q70EL4 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.44□□□□□ -0.1
USP43Q70EL4 AC005622.1-201ENST00000636801 1703 ntBASIC14.44□□□□□ -0.1
USP43Q70EL4 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.44□□□□□ -0.1
USP43Q70EL4 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
USP43Q70EL4 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.43□□□□□ -0.1
USP43Q70EL4 REXO1L2P-201ENST00000425429 2069 ntBASIC14.43□□□□□ -0.1
USP43Q70EL4 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.43□□□□□ -0.1
USP43Q70EL4 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
USP43Q70EL4 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
USP43Q70EL4 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.43□□□□□ -0.1
USP43Q70EL4 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.43□□□□□ -0.1
USP43Q70EL4 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC14.43□□□□□ -0.1
USP43Q70EL4 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.43□□□□□ -0.1
USP43Q70EL4 RPS2P1-201ENST00000434010 821 ntBASIC14.43□□□□□ -0.1
USP43Q70EL4 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC14.43□□□□□ -0.1
USP43Q70EL4 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP43Q70EL4 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.43□□□□□ -0.1
USP43Q70EL4 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms