Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 PRPSAP1-201ENST00000324684 1678 ntTSL 2 BASIC10.88□□□□□ -0.671e-14■□□□□ 9.2
LIN28BQ6ZN17 PRPSAP1-211ENST00000588364 1004 ntTSL 510.85□□□□□ -0.671e-14■□□□□ 9.2
LIN28BQ6ZN17 TAL1-203ENST00000459729 1796 ntTSL 1 (best)24.65■■□□□ 1.543e-16■□□□□ 9.2
LIN28BQ6ZN17 RPS21-203ENST00000370592 401 ntTSL 213.71□□□□□ -0.213e-16■□□□□ 9.2
LIN28BQ6ZN17 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC4.15□□□□□ -1.749e-7■□□□□ 9.2
LIN28BQ6ZN17 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC23.96■■□□□ 1.431e-8■□□□□ 9.2
LIN28BQ6ZN17 XBP1-205ENST00000482720 520 ntTSL 223.96■■□□□ 1.431e-8■□□□□ 9.2
LIN28BQ6ZN17 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.414e-7■□□□□ 9.2
LIN28BQ6ZN17 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.221e-8■□□□□ 9.2
LIN28BQ6ZN17 EIF2AK4-206ENST00000559032 1089 ntTSL 515.53■□□□□ 0.081e-8■□□□□ 9.2
LIN28BQ6ZN17 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.031e-8■□□□□ 9.2
LIN28BQ6ZN17 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.061e-8■□□□□ 9.2
LIN28BQ6ZN17 TJP2-211ENST00000636247 3725 ntTSL 1 (best)12.68□□□□□ -0.381e-8■□□□□ 9.2
LIN28BQ6ZN17 TJP2-206ENST00000453658 4129 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.381e-8■□□□□ 9.2
LIN28BQ6ZN17 TJP2-201ENST00000348208 4058 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.451e-8■□□□□ 9.2
LIN28BQ6ZN17 TJP2-209ENST00000539225 3838 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.571e-8■□□□□ 9.2
LIN28BQ6ZN17 XRCC6-207ENST00000464116 359 ntTSL 28.32□□□□□ -1.081e-8■□□□□ 9.2
LIN28BQ6ZN17 UTRN-206ENST00000421035 572 ntTSL 26.9□□□□□ -1.32e-11■□□□□ 9.2
LIN28BQ6ZN17 UTRN-213ENST00000628146 597 ntTSL 23.55□□□□□ -1.842e-11■□□□□ 9.2
LIN28BQ6ZN17 RPS6-205ENST00000498815 480 ntTSL 24.6□□□□□ -1.678e-15■□□□□ 9.1
LIN28BQ6ZN17 LSS-211ENST00000522411 2523 ntTSL 2 BASIC13.65□□□□□ -0.221e-17■□□□□ 9.1
LIN28BQ6ZN17 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.341e-323■□□□□ 9.1
LIN28BQ6ZN17 SLC38A2-203ENST00000547252 847 ntTSL 39.46□□□□□ -0.93e-13■□□□□ 9.1
LIN28BQ6ZN17 SLC38A2-211ENST00000552414 566 ntTSL 35.24□□□□□ -1.573e-13■□□□□ 9.1
LIN28BQ6ZN17 SLC38A2-205ENST00000548236 865 ntTSL 24.74□□□□□ -1.653e-13■□□□□ 9.1
LIN28BQ6ZN17 SLC38A2-207ENST00000548870 576 ntTSL 23.72□□□□□ -1.813e-13■□□□□ 9.1
LIN28BQ6ZN17 EIF3I-201ENST00000355082 564 ntTSL 317.17■□□□□ 0.342e-8■□□□□ 9.1
LIN28BQ6ZN17 EIF3I-205ENST00000483517 744 ntTSL 515.09■□□□□ 0.012e-8■□□□□ 9.1
LIN28BQ6ZN17 EIF3I-203ENST00000471486 825 ntTSL 212.82□□□□□ -0.362e-8■□□□□ 9.1
LIN28BQ6ZN17 EIF3I-206ENST00000489353 527 ntTSL 311.82□□□□□ -0.522e-8■□□□□ 9.1
LIN28BQ6ZN17 NARS-206ENST00000587366 515 ntTSL 414.79□□□□□ -0.045e-9■□□□□ 9.1
LIN28BQ6ZN17 ZRANB2-207ENST00000611683 1257 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.357e-7■□□□□ 9.1
LIN28BQ6ZN17 ZRANB2-206ENST00000487510 579 ntTSL 25.57□□□□□ -1.527e-7■□□□□ 9.1
LIN28BQ6ZN17 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.637e-7■□□□□ 9.1
LIN28BQ6ZN17 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22.13■■□□□ 1.136e-8■□□□□ 9.1
LIN28BQ6ZN17 TPM4-208ENST00000588410 563 ntTSL 422.13■■□□□ 1.136e-8■□□□□ 9.1
LIN28BQ6ZN17 TPM4-204ENST00000586499 708 ntTSL 421.57■■□□□ 1.046e-8■□□□□ 9.1
LIN28BQ6ZN17 TPM4-206ENST00000587201 877 ntTSL 220.06■□□□□ 0.86e-8■□□□□ 9.1
LIN28BQ6ZN17 TPM4-205ENST00000586833 558 ntTSL 515.63■□□□□ 0.096e-8■□□□□ 9.1
LIN28BQ6ZN17 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.066e-8■□□□□ 9.1
LIN28BQ6ZN17 TPM4-215ENST00000592138 635 ntTSL 210.73□□□□□ -0.696e-8■□□□□ 9.1
LIN28BQ6ZN17 TPM4-210ENST00000588507 367 ntTSL 38.62□□□□□ -1.036e-8■□□□□ 9.1
LIN28BQ6ZN17 TRIM28-213ENST00000598355 714 ntTSL 218.1■□□□□ 0.492e-9■□□□□ 9.1
LIN28BQ6ZN17 PPM1H-205ENST00000551519 584 ntTSL 48.52□□□□□ -1.051e-6■□□□□ 9.1
LIN28BQ6ZN17 U2SURP-211ENST00000488497 3557 ntTSL 1 (best)7.42□□□□□ -1.221e-6■□□□□ 9.1
LIN28BQ6ZN17 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC5.14□□□□□ -1.591e-6■□□□□ 9.1
LIN28BQ6ZN17 U2SURP-212ENST00000488587 866 ntTSL 34.37□□□□□ -1.711e-6■□□□□ 9.1
LIN28BQ6ZN17 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.741e-6■□□□□ 9.1
LIN28BQ6ZN17 U2SURP-201ENST00000461591 1580 ntTSL 24.11□□□□□ -1.751e-6■□□□□ 9.1
LIN28BQ6ZN17 U2SURP-203ENST00000463563 4364 ntTSL 22.45□□□□□ -2.021e-6■□□□□ 9.1
LIN28BQ6ZN17 SLC2A1-205ENST00000475162 598 ntTSL 516.35■□□□□ 0.213e-14■□□□□ 9.1
LIN28BQ6ZN17 APP-207ENST00000415997 541 ntTSL 33.69□□□□□ -1.823e-8■□□□□ 9.1
LIN28BQ6ZN17 SLC4A2-207ENST00000469355 464 ntTSL 220.21■□□□□ 0.831e-8■□□□□ 9.1
LIN28BQ6ZN17 SLC4A2-219ENST00000494298 496 ntTSL 420.21■□□□□ 0.831e-8■□□□□ 9.1
LIN28BQ6ZN17 SLC4A2-210ENST00000480107 793 ntTSL 215.3■□□□□ 0.041e-8■□□□□ 9.1
LIN28BQ6ZN17 CCT3-202ENST00000368256 1063 ntTSL 311.34□□□□□ -0.591e-8■□□□□ 9.1
LIN28BQ6ZN17 NPM1-207ENST00000521260 510 ntTSL 24.38□□□□□ -1.716e-19■□□□□ 9.1
LIN28BQ6ZN17 NPM1-209ENST00000521710 386 ntTSL 22.64□□□□□ -1.996e-19■□□□□ 9.1
LIN28BQ6ZN17 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.272e-6■□□□□ 9.1
LIN28BQ6ZN17 PBX2-204ENST00000495300 920 ntTSL 315.26■□□□□ 0.032e-6■□□□□ 9.1
LIN28BQ6ZN17 MAGED1-209ENST00000485420 2906 ntTSL 512.59□□□□□ -0.392e-8■□□□□ 9.1
LIN28BQ6ZN17 MAGED1-201ENST00000326587 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.432e-8■□□□□ 9.1
LIN28BQ6ZN17 MAGED1-202ENST00000375695 2875 ntTSL 1 (best) BASIC12.14□□□□□ -0.472e-8■□□□□ 9.1
LIN28BQ6ZN17 MAGED1-203ENST00000375722 2806 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.492e-8■□□□□ 9.1
LIN28BQ6ZN17 MAGED1-204ENST00000375772 2701 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.82e-8■□□□□ 9.1
LIN28BQ6ZN17 MAGED1-210ENST00000494718 5418 ntTSL 29.45□□□□□ -0.92e-8■□□□□ 9.1
LIN28BQ6ZN17 MAGED1-206ENST00000473931 950 ntTSL 29.11□□□□□ -0.952e-8■□□□□ 9.1
LIN28BQ6ZN17 LRPPRC-207ENST00000467058 557 ntTSL 35.15□□□□□ -1.592e-8■□□□□ 9.1
LIN28BQ6ZN17 OAZ1-204ENST00000588673 780 ntTSL 323.03■■□□□ 1.286e-16■□□□□ 9
LIN28BQ6ZN17 OAZ1-201ENST00000581150 1131 ntTSL 519.11■□□□□ 0.656e-16■□□□□ 9
LIN28BQ6ZN17 OAZ1-209ENST00000592787 857 ntTSL 218.25■□□□□ 0.516e-16■□□□□ 9
LIN28BQ6ZN17 OAZ1-205ENST00000589361 679 ntTSL 1 (best)17.73■□□□□ 0.436e-16■□□□□ 9
LIN28BQ6ZN17 OAZ1-208ENST00000592727 726 ntTSL 217.1■□□□□ 0.336e-16■□□□□ 9
LIN28BQ6ZN17 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC25.97■■□□□ 1.752e-7■□□□□ 9
LIN28BQ6ZN17 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC25.22■■□□□ 1.639e-8■□□□□ 9
LIN28BQ6ZN17 NFKBIA-202ENST00000553342 212 ntTSL 523.07■■□□□ 1.287e-6■□□□□ 9
LIN28BQ6ZN17 RNF121-214ENST00000533380 870 ntTSL 3 BASIC22.62■■□□□ 1.217e-6■□□□□ 9
LIN28BQ6ZN17 TMEM132A-209ENST00000538090 591 ntTSL 222.34■■□□□ 1.177e-6■□□□□ 9
LIN28BQ6ZN17 TMEM132A-210ENST00000540112 2013 ntTSL 221.9■■□□□ 1.17e-6■□□□□ 9
LIN28BQ6ZN17 NFKBIA-205ENST00000555629 599 ntTSL 221.34■■□□□ 1.017e-6■□□□□ 9
LIN28BQ6ZN17 TMEM132A-206ENST00000536928 582 ntTSL 320.38■□□□□ 0.857e-6■□□□□ 9
LIN28BQ6ZN17 RNF121-212ENST00000530655 786 ntTSL 320.17■□□□□ 0.827e-6■□□□□ 9
LIN28BQ6ZN17 SHISA5-212ENST00000465449 1739 ntTSL 219.99■□□□□ 0.799e-8■□□□□ 9
LIN28BQ6ZN17 NFKBIA-207ENST00000557100 825 ntTSL 319.72■□□□□ 0.757e-6■□□□□ 9
LIN28BQ6ZN17 SHISA5-204ENST00000417962 2306 ntTSL 218.89■□□□□ 0.619e-8■□□□□ 9
LIN28BQ6ZN17 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.557e-6■□□□□ 9
LIN28BQ6ZN17 RNF121-204ENST00000490867 840 ntTSL 518.37■□□□□ 0.537e-6■□□□□ 9
LIN28BQ6ZN17 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.517e-6■□□□□ 9
LIN28BQ6ZN17 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.2■□□□□ 0.59e-8■□□□□ 9
LIN28BQ6ZN17 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.83■□□□□ 0.459e-8■□□□□ 9
LIN28BQ6ZN17 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.447e-6■□□□□ 9
LIN28BQ6ZN17 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.54■□□□□ 0.47e-6■□□□□ 9
LIN28BQ6ZN17 NFKBIA-210ENST00000557459 780 ntTSL 217.5■□□□□ 0.397e-6■□□□□ 9
LIN28BQ6ZN17 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.357e-6■□□□□ 9
LIN28BQ6ZN17 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.342e-7■□□□□ 9
LIN28BQ6ZN17 NFKBIA-203ENST00000554001 1396 ntTSL 517.03■□□□□ 0.327e-6■□□□□ 9
LIN28BQ6ZN17 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.98■□□□□ 0.319e-8■□□□□ 9
LIN28BQ6ZN17 TMEM132A-204ENST00000535480 692 ntTSL 316.9■□□□□ 0.37e-6■□□□□ 9
LIN28BQ6ZN17 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.72■□□□□ 0.279e-8■□□□□ 9
LIN28BQ6ZN17 SDC1-204ENST00000429035 646 ntTSL 316.72■□□□□ 0.272e-7■□□□□ 9
Retrieved 100 of 21,972 protein–RNA pairs in 506.6 ms