Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 MEP1AP4-201ENST00000423244 1087 ntBASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 MYCLP2-201ENST00000449268 967 ntBASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 FTH1-202ENST00000526640 786 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 SERF2-217ENST00000630046 862 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 TPO-203ENST00000346956 2923 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CCDC144BQ3MJ40 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 ACA64.2-201ENST00000459014 129 ntBASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 CTBP2P3-201ENST00000585629 1255 ntBASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 AC099568.2-201ENST00000609194 695 ntBASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CCDC144BQ3MJ40 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.51
CCDC144BQ3MJ40 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC144BQ3MJ40 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.27■□□□□ 0.51
CCDC144BQ3MJ40 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.27■□□□□ 0.51
CCDC144BQ3MJ40 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC144BQ3MJ40 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.51
CCDC144BQ3MJ40 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
CCDC144BQ3MJ40 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
CCDC144BQ3MJ40 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC144BQ3MJ40 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC18.27■□□□□ 0.51
CCDC144BQ3MJ40 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 AC112492.5-201ENST00000421897 457 ntBASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 RN7SL837P-201ENST00000463010 287 ntBASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 ELK1P1-201ENST00000485699 580 ntBASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC144BQ3MJ40 KRT17P8-201ENST00000540749 863 ntBASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms