Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX4Q33E94 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX4Q33E94 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX4Q33E94 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX4Q33E94 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFX4Q33E94 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
RFX4Q33E94 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
RFX4Q33E94 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
RFX4Q33E94 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
RFX4Q33E94 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
RFX4Q33E94 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
RFX4Q33E94 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC14.71□□□□□ -0.06
RFX4Q33E94 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
RFX4Q33E94 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
RFX4Q33E94 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.71□□□□□ -0.06
RFX4Q33E94 AC009090.5-201ENST00000624886 2285 ntBASIC14.71□□□□□ -0.06
RFX4Q33E94 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.71□□□□□ -0.06
RFX4Q33E94 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
RFX4Q33E94 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.06
RFX4Q33E94 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
RFX4Q33E94 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
RFX4Q33E94 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
RFX4Q33E94 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
RFX4Q33E94 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX4Q33E94 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC14.7□□□□□ -0.06
RFX4Q33E94 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX4Q33E94 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.7□□□□□ -0.06
RFX4Q33E94 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 AC007686.3-201ENST00000619017 3487 ntBASIC14.7□□□□□ -0.06
RFX4Q33E94 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.7□□□□□ -0.06
RFX4Q33E94 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
RFX4Q33E94 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX4Q33E94 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX4Q33E94 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
RFX4Q33E94 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
RFX4Q33E94 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX4Q33E94 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.7□□□□□ -0.06
RFX4Q33E94 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
RFX4Q33E94 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 IGLL3P-201ENST00000412472 434 ntBASIC14.7□□□□□ -0.06
RFX4Q33E94 FAM8A3P-201ENST00000427218 844 ntBASIC14.7□□□□□ -0.06
RFX4Q33E94 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.7□□□□□ -0.06
RFX4Q33E94 HS6ST1P1-201ENST00000481504 1234 ntBASIC14.7□□□□□ -0.06
RFX4Q33E94 CFL1-202ENST00000524553 860 ntTSL 2 BASIC14.7□□□□□ -0.06
RFX4Q33E94 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
RFX4Q33E94 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX4Q33E94 CALM3-211ENST00000598871 561 ntTSL 4 BASIC14.7□□□□□ -0.06
RFX4Q33E94 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 AL691432.3-201ENST00000621860 400 ntBASIC14.7□□□□□ -0.06
RFX4Q33E94 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX4Q33E94 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 AC127383.1-201ENST00000444697 1800 ntBASIC14.7□□□□□ -0.06
RFX4Q33E94 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX4Q33E94 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
RFX4Q33E94 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX4Q33E94 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
RFX4Q33E94 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
RFX4Q33E94 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.7□□□□□ -0.06
RFX4Q33E94 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFX4Q33E94 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
RFX4Q33E94 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RFX4Q33E94 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
RFX4Q33E94 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX4Q33E94 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
RFX4Q33E94 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX4Q33E94 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.69□□□□□ -0.06
RFX4Q33E94 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
RFX4Q33E94 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.69□□□□□ -0.06
RFX4Q33E94 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RFX4Q33E94 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX4Q33E94 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
RFX4Q33E94 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFX4Q33E94 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC14.69□□□□□ -0.06
RFX4Q33E94 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC14.69□□□□□ -0.06
RFX4Q33E94 AL031284.1-201ENST00000419297 478 ntBASIC14.69□□□□□ -0.06
RFX4Q33E94 AC092474.2-201ENST00000424288 719 ntBASIC14.69□□□□□ -0.06
RFX4Q33E94 AC098831.1-202ENST00000438821 336 ntBASIC14.69□□□□□ -0.06
RFX4Q33E94 AC079781.3-201ENST00000449110 356 ntBASIC14.69□□□□□ -0.06
RFX4Q33E94 PPIE-208ENST00000470213 927 ntTSL 3 BASIC14.69□□□□□ -0.06
RFX4Q33E94 KRT18P34-201ENST00000488218 1270 ntBASIC14.69□□□□□ -0.06
RFX4Q33E94 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC14.69□□□□□ -0.06
RFX4Q33E94 UNC93B6-202ENST00000528242 690 ntBASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms