Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
ABCA4P78363 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 PKIG-203ENST00000372887 769 ntTSL 3 BASIC13.53□□□□□ -0.24
ABCA4P78363 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
ABCA4P78363 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC13.53□□□□□ -0.24
ABCA4P78363 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC13.53□□□□□ -0.24
ABCA4P78363 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
ABCA4P78363 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC13.53□□□□□ -0.24
ABCA4P78363 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC13.53□□□□□ -0.24
ABCA4P78363 AP001889.1-201ENST00000525414 633 ntBASIC13.53□□□□□ -0.24
ABCA4P78363 C2orf69P2-201ENST00000562032 1123 ntBASIC13.53□□□□□ -0.24
ABCA4P78363 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC13.53□□□□□ -0.24
ABCA4P78363 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
ABCA4P78363 AC134407.2-201ENST00000625089 1978 ntBASIC13.53□□□□□ -0.24
ABCA4P78363 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC13.53□□□□□ -0.24
ABCA4P78363 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
ABCA4P78363 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
ABCA4P78363 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC13.53□□□□□ -0.24
ABCA4P78363 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC13.53□□□□□ -0.24
ABCA4P78363 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC13.53□□□□□ -0.24
ABCA4P78363 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
ABCA4P78363 AGGF1P2-201ENST00000426656 2106 ntBASIC13.52□□□□□ -0.24
ABCA4P78363 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC13.52□□□□□ -0.24
ABCA4P78363 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
ABCA4P78363 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
ABCA4P78363 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC13.52□□□□□ -0.24
ABCA4P78363 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
ABCA4P78363 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
ABCA4P78363 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
ABCA4P78363 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC13.52□□□□□ -0.24
ABCA4P78363 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
ABCA4P78363 PHKG1P2-201ENST00000457537 863 ntBASIC13.52□□□□□ -0.24
ABCA4P78363 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.52□□□□□ -0.24
ABCA4P78363 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC13.52□□□□□ -0.24
ABCA4P78363 AC010328.2-201ENST00000597698 1111 ntBASIC13.52□□□□□ -0.24
ABCA4P78363 MIR6727-201ENST00000620702 65 ntBASIC13.52□□□□□ -0.24
ABCA4P78363 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.52□□□□□ -0.24
ABCA4P78363 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
ABCA4P78363 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
ABCA4P78363 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
ABCA4P78363 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
ABCA4P78363 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.25
ABCA4P78363 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
ABCA4P78363 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.52□□□□□ -0.25
ABCA4P78363 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
ABCA4P78363 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.52□□□□□ -0.25
ABCA4P78363 AC074338.1-201ENST00000416825 156 ntBASIC13.52□□□□□ -0.25
ABCA4P78363 NUS1P3-201ENST00000423502 862 ntBASIC13.52□□□□□ -0.25
ABCA4P78363 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC13.52□□□□□ -0.25
ABCA4P78363 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC13.52□□□□□ -0.25
ABCA4P78363 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
ABCA4P78363 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC13.52□□□□□ -0.25
ABCA4P78363 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC13.52□□□□□ -0.25
ABCA4P78363 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC13.52□□□□□ -0.25
ABCA4P78363 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
ABCA4P78363 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC13.52□□□□□ -0.25
ABCA4P78363 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
ABCA4P78363 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC13.52□□□□□ -0.25
ABCA4P78363 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
ABCA4P78363 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
ABCA4P78363 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.51□□□□□ -0.25
ABCA4P78363 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
ABCA4P78363 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC13.51□□□□□ -0.25
ABCA4P78363 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC13.51□□□□□ -0.25
ABCA4P78363 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
ABCA4P78363 FXNP2-201ENST00000411625 547 ntBASIC13.51□□□□□ -0.25
ABCA4P78363 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.51□□□□□ -0.25
ABCA4P78363 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms