Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
NEK3P51956 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.27■□□□□ 0.2
NEK3P51956 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 AC236430.1-201ENST00000402231 743 ntBASIC16.27■□□□□ 0.2
NEK3P51956 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.27■□□□□ 0.2
NEK3P51956 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.27■□□□□ 0.2
NEK3P51956 AC002472.2-201ENST00000442739 958 ntBASIC16.27■□□□□ 0.2
NEK3P51956 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.27■□□□□ 0.2
NEK3P51956 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.27■□□□□ 0.2
NEK3P51956 TERF1P3-201ENST00000505638 1227 ntBASIC16.27■□□□□ 0.2
NEK3P51956 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.27■□□□□ 0.2
NEK3P51956 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.27■□□□□ 0.2
NEK3P51956 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.27■□□□□ 0.2
NEK3P51956 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
NEK3P51956 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.27■□□□□ 0.19
NEK3P51956 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.27■□□□□ 0.19
NEK3P51956 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NEK3P51956 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.27■□□□□ 0.19
NEK3P51956 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.27■□□□□ 0.19
NEK3P51956 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NEK3P51956 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
NEK3P51956 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NEK3P51956 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
NEK3P51956 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.26■□□□□ 0.19
NEK3P51956 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
NEK3P51956 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.26■□□□□ 0.19
NEK3P51956 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.26■□□□□ 0.19
NEK3P51956 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.26■□□□□ 0.19
NEK3P51956 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
NEK3P51956 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.26■□□□□ 0.19
NEK3P51956 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.26■□□□□ 0.19
NEK3P51956 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC16.26■□□□□ 0.19
NEK3P51956 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.26■□□□□ 0.19
NEK3P51956 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
NEK3P51956 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.26■□□□□ 0.19
NEK3P51956 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
NEK3P51956 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.26■□□□□ 0.19
NEK3P51956 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.26■□□□□ 0.19
NEK3P51956 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.26■□□□□ 0.19
NEK3P51956 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.26■□□□□ 0.19
NEK3P51956 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.26■□□□□ 0.19
NEK3P51956 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.26■□□□□ 0.19
NEK3P51956 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.26■□□□□ 0.19
NEK3P51956 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.26■□□□□ 0.19
NEK3P51956 RN7SL204P-201ENST00000582831 262 ntBASIC16.26■□□□□ 0.19
NEK3P51956 AC138761.1-201ENST00000584393 385 ntBASIC16.26■□□□□ 0.19
NEK3P51956 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.26■□□□□ 0.19
NEK3P51956 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.26■□□□□ 0.19
NEK3P51956 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
NEK3P51956 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.26■□□□□ 0.19
NEK3P51956 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NEK3P51956 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NEK3P51956 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NEK3P51956 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.25■□□□□ 0.19
NEK3P51956 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.25■□□□□ 0.19
NEK3P51956 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.25■□□□□ 0.19
NEK3P51956 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.25■□□□□ 0.19
NEK3P51956 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NEK3P51956 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.25■□□□□ 0.19
NEK3P51956 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NEK3P51956 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
NEK3P51956 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
NEK3P51956 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
NEK3P51956 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NEK3P51956 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NEK3P51956 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.25■□□□□ 0.19
NEK3P51956 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
NEK3P51956 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
NEK3P51956 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.25■□□□□ 0.19
NEK3P51956 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
NEK3P51956 MIR661-201ENST00000384842 89 ntBASIC16.25■□□□□ 0.19
NEK3P51956 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.25■□□□□ 0.19
NEK3P51956 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms