Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RXRBP28702 AL158070.2-201ENST00000623713 1621 ntBASIC20.09■□□□□ 0.81
RXRBP28702 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RXRBP28702 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RXRBP28702 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
RXRBP28702 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RXRBP28702 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RXRBP28702 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.09■□□□□ 0.81
RXRBP28702 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RXRBP28702 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
RXRBP28702 TNXA-203ENST00000507684 2038 ntBASIC20.09■□□□□ 0.81
RXRBP28702 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RXRBP28702 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
RXRBP28702 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RXRBP28702 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RXRBP28702 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
RXRBP28702 AK6-201ENST00000380818 1183 ntTSL 2 BASIC20.09■□□□□ 0.81
RXRBP28702 RN7SL81P-201ENST00000493781 261 ntBASIC20.09■□□□□ 0.81
RXRBP28702 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC20.09■□□□□ 0.81
RXRBP28702 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
RXRBP28702 HPN-206ENST00000597419 1212 ntTSL 5 BASIC20.09■□□□□ 0.81
RXRBP28702 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC20.09■□□□□ 0.81
RXRBP28702 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC20.09■□□□□ 0.81
RXRBP28702 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.09■□□□□ 0.81
RXRBP28702 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
RXRBP28702 MBLAC2-202ENST00000514906 1936 ntBASIC20.09■□□□□ 0.81
RXRBP28702 CROCCP2-202ENST00000412962 2773 ntBASIC20.09■□□□□ 0.81
RXRBP28702 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.09■□□□□ 0.81
RXRBP28702 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
RXRBP28702 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RXRBP28702 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
RXRBP28702 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC20.08■□□□□ 0.81
RXRBP28702 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC20.08■□□□□ 0.81
RXRBP28702 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RXRBP28702 BICD1-207ENST00000551848 1962 ntBASIC20.08■□□□□ 0.81
RXRBP28702 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.08■□□□□ 0.81
RXRBP28702 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
RXRBP28702 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RXRBP28702 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC20.08■□□□□ 0.81
RXRBP28702 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
RXRBP28702 MIR557-201ENST00000385239 98 ntBASIC20.08■□□□□ 0.81
RXRBP28702 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC20.08■□□□□ 0.81
RXRBP28702 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RXRBP28702 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC20.08■□□□□ 0.81
RXRBP28702 AL645728.2-202ENST00000641679 227 ntBASIC20.08■□□□□ 0.81
RXRBP28702 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RXRBP28702 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
RXRBP28702 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RXRBP28702 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
RXRBP28702 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
RXRBP28702 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.08■□□□□ 0.8
RXRBP28702 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.08■□□□□ 0.8
RXRBP28702 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RXRBP28702 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC20.08■□□□□ 0.8
RXRBP28702 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RXRBP28702 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC20.07■□□□□ 0.8
RXRBP28702 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RXRBP28702 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RXRBP28702 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC20.07■□□□□ 0.8
RXRBP28702 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
RXRBP28702 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.07■□□□□ 0.8
RXRBP28702 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
RXRBP28702 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.07■□□□□ 0.8
RXRBP28702 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
RXRBP28702 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RXRBP28702 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RXRBP28702 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
RXRBP28702 AC012441.2-201ENST00000444843 739 ntBASIC20.07■□□□□ 0.8
RXRBP28702 HNRNPA1P42-201ENST00000458678 957 ntBASIC20.07■□□□□ 0.8
RXRBP28702 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC20.07■□□□□ 0.8
RXRBP28702 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC20.07■□□□□ 0.8
RXRBP28702 THY1-209ENST00000580275 578 ntTSL 3 BASIC20.07■□□□□ 0.8
RXRBP28702 AL603764.1-201ENST00000636452 321 ntBASIC20.07■□□□□ 0.8
RXRBP28702 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
RXRBP28702 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
RXRBP28702 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
RXRBP28702 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RXRBP28702 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RXRBP28702 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RXRBP28702 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC20.06■□□□□ 0.8
RXRBP28702 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
RXRBP28702 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC20.06■□□□□ 0.8
RXRBP28702 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RXRBP28702 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RXRBP28702 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
RXRBP28702 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
RXRBP28702 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RXRBP28702 AC078875.1-201ENST00000431907 724 ntBASIC20.06■□□□□ 0.8
RXRBP28702 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC20.06■□□□□ 0.8
RXRBP28702 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC20.06■□□□□ 0.8
RXRBP28702 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC20.06■□□□□ 0.8
RXRBP28702 AP000911.2-201ENST00000534330 502 ntBASIC20.06■□□□□ 0.8
RXRBP28702 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RXRBP28702 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC20.06■□□□□ 0.8
RXRBP28702 HMGB1P24-201ENST00000611897 328 ntBASIC20.06■□□□□ 0.8
RXRBP28702 AC011471.3-201ENST00000623576 402 ntBASIC20.06■□□□□ 0.8
RXRBP28702 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
RXRBP28702 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RXRBP28702 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RXRBP28702 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms