Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
HMGA1P17096 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.16■□□□□ 0.18
HMGA1P17096 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.16■□□□□ 0.18
HMGA1P17096 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.16■□□□□ 0.18
HMGA1P17096 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
HMGA1P17096 RPF1-202ENST00000370656 724 ntTSL 2 BASIC16.16■□□□□ 0.18
HMGA1P17096 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.16■□□□□ 0.18
HMGA1P17096 C2orf27AP3-201ENST00000434123 579 ntBASIC16.16■□□□□ 0.18
HMGA1P17096 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
HMGA1P17096 KRT18P25-201ENST00000508931 1278 ntBASIC16.16■□□□□ 0.18
HMGA1P17096 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.16■□□□□ 0.18
HMGA1P17096 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.16■□□□□ 0.18
HMGA1P17096 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.16■□□□□ 0.18
HMGA1P17096 AL354718.3-201ENST00000616414 581 ntBASIC16.16■□□□□ 0.18
HMGA1P17096 CR382287.1-201ENST00000623954 586 ntBASIC16.16■□□□□ 0.18
HMGA1P17096 PRSS30P-206ENST00000641773 873 ntBASIC16.16■□□□□ 0.18
HMGA1P17096 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.16■□□□□ 0.18
HMGA1P17096 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.16■□□□□ 0.18
HMGA1P17096 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.16■□□□□ 0.18
HMGA1P17096 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
HMGA1P17096 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.16■□□□□ 0.18
HMGA1P17096 KRT8P35-201ENST00000483942 1338 ntBASIC16.16■□□□□ 0.18
HMGA1P17096 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGA1P17096 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC16.16■□□□□ 0.18
HMGA1P17096 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.15■□□□□ 0.18
HMGA1P17096 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
HMGA1P17096 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 AC009090.5-201ENST00000624886 2285 ntBASIC16.15■□□□□ 0.18
HMGA1P17096 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 RNU1-114P-201ENST00000365297 166 ntBASIC16.15■□□□□ 0.18
HMGA1P17096 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.15■□□□□ 0.18
HMGA1P17096 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC16.15■□□□□ 0.18
HMGA1P17096 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.15■□□□□ 0.18
HMGA1P17096 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.15■□□□□ 0.18
HMGA1P17096 KLF2P2-201ENST00000416807 1039 ntBASIC16.15■□□□□ 0.18
HMGA1P17096 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.15■□□□□ 0.18
HMGA1P17096 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
HMGA1P17096 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.15■□□□□ 0.18
HMGA1P17096 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.15■□□□□ 0.18
HMGA1P17096 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.15■□□□□ 0.18
HMGA1P17096 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.15■□□□□ 0.18
HMGA1P17096 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HMGA1P17096 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.15■□□□□ 0.18
HMGA1P17096 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.15■□□□□ 0.18
HMGA1P17096 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC16.15■□□□□ 0.18
HMGA1P17096 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.15■□□□□ 0.18
HMGA1P17096 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
HMGA1P17096 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
HMGA1P17096 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGA1P17096 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.15■□□□□ 0.18
HMGA1P17096 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HMGA1P17096 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.15■□□□□ 0.18
HMGA1P17096 CICP13-201ENST00000422015 2789 ntBASIC16.15■□□□□ 0.18
HMGA1P17096 OR6D1P-203ENST00000641209 4860 ntBASIC16.14■□□□□ 0.18
HMGA1P17096 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
HMGA1P17096 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.14■□□□□ 0.18
HMGA1P17096 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.18
HMGA1P17096 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.14■□□□□ 0.17
HMGA1P17096 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGA1P17096 AC026691.1-201ENST00000602502 2017 ntBASIC16.14■□□□□ 0.17
HMGA1P17096 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
HMGA1P17096 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
HMGA1P17096 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGA1P17096 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms