Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HOXC4P09017 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HOXC4P09017 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HOXC4P09017 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HOXC4P09017 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.23■□□□□ 0.03
HOXC4P09017 AC016694.1-201ENST00000434179 700 ntBASIC15.23■□□□□ 0.03
HOXC4P09017 RPL7P3-201ENST00000441388 714 ntBASIC15.23■□□□□ 0.03
HOXC4P09017 KLF2P4-201ENST00000451959 1225 ntBASIC15.23■□□□□ 0.03
HOXC4P09017 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HOXC4P09017 AC007551.1-201ENST00000457394 519 ntBASIC15.23■□□□□ 0.03
HOXC4P09017 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC15.23■□□□□ 0.03
HOXC4P09017 AC119751.2-201ENST00000504529 210 ntBASIC15.23■□□□□ 0.03
HOXC4P09017 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.23■□□□□ 0.03
HOXC4P09017 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15.23■□□□□ 0.03
HOXC4P09017 AC133552.6-201ENST00000613406 534 ntBASIC15.23■□□□□ 0.03
HOXC4P09017 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
HOXC4P09017 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HOXC4P09017 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
HOXC4P09017 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
HOXC4P09017 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HOXC4P09017 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC15.23■□□□□ 0.03
HOXC4P09017 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HOXC4P09017 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HOXC4P09017 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
HOXC4P09017 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.23■□□□□ 0.03
HOXC4P09017 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
HOXC4P09017 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HOXC4P09017 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HOXC4P09017 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC15.23■□□□□ 0.03
HOXC4P09017 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HOXC4P09017 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 PDIA3P1-201ENST00000471856 1510 ntBASIC15.22■□□□□ 0.03
HOXC4P09017 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
HOXC4P09017 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
HOXC4P09017 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.22■□□□□ 0.03
HOXC4P09017 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
HOXC4P09017 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC15.22■□□□□ 0.03
HOXC4P09017 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.22■□□□□ 0.03
HOXC4P09017 AC104457.1-201ENST00000401024 814 ntBASIC15.22■□□□□ 0.03
HOXC4P09017 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.22■□□□□ 0.03
HOXC4P09017 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.22■□□□□ 0.03
HOXC4P09017 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.22■□□□□ 0.03
HOXC4P09017 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.22■□□□□ 0.03
HOXC4P09017 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC15.22■□□□□ 0.03
HOXC4P09017 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.22■□□□□ 0.03
HOXC4P09017 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
HOXC4P09017 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.22■□□□□ 0.03
HOXC4P09017 Six3os1_5.1-201ENST00000611000 271 ntBASIC15.22■□□□□ 0.03
HOXC4P09017 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.22■□□□□ 0.03
HOXC4P09017 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
HOXC4P09017 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.22■□□□□ 0.03
HOXC4P09017 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.22■□□□□ 0.03
HOXC4P09017 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.22■□□□□ 0.03
HOXC4P09017 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.22■□□□□ 0.03
HOXC4P09017 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
HOXC4P09017 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
HOXC4P09017 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.22■□□□□ 0.03
HOXC4P09017 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HOXC4P09017 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
HOXC4P09017 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
HOXC4P09017 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HOXC4P09017 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
HOXC4P09017 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HOXC4P09017 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.21■□□□□ 0.03
HOXC4P09017 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
HOXC4P09017 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HOXC4P09017 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
HOXC4P09017 MSTO2P-201ENST00000314835 1709 ntBASIC15.21■□□□□ 0.03
HOXC4P09017 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.21■□□□□ 0.03
HOXC4P09017 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HOXC4P09017 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.21■□□□□ 0.03
HOXC4P09017 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
HOXC4P09017 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
HOXC4P09017 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
HOXC4P09017 RPS2P32-201ENST00000439199 892 ntBASIC15.21■□□□□ 0.03
HOXC4P09017 KRT223P-202ENST00000449164 1292 ntBASIC15.21■□□□□ 0.03
HOXC4P09017 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms