Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MSH4O15457 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.58■□□□□ 0.4
MSH4O15457 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
MSH4O15457 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC17.58■□□□□ 0.4
MSH4O15457 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH4O15457 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH4O15457 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH4O15457 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MSH4O15457 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH4O15457 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MSH4O15457 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.58■□□□□ 0.4
MSH4O15457 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH4O15457 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH4O15457 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
MSH4O15457 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
MSH4O15457 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSH4O15457 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.58■□□□□ 0.4
MSH4O15457 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.57■□□□□ 0.4
MSH4O15457 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
MSH4O15457 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.57■□□□□ 0.4
MSH4O15457 INTS4P2-202ENST00000614726 2019 ntBASIC17.57■□□□□ 0.4
MSH4O15457 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.57■□□□□ 0.4
MSH4O15457 DRD5P1-201ENST00000456605 1438 ntBASIC17.57■□□□□ 0.4
MSH4O15457 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 CU639417.3-201ENST00000624240 1404 ntBASIC17.57■□□□□ 0.4
MSH4O15457 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.57■□□□□ 0.4
MSH4O15457 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.57■□□□□ 0.4
MSH4O15457 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.57■□□□□ 0.4
MSH4O15457 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.57■□□□□ 0.4
MSH4O15457 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 RN7SL752P-201ENST00000463779 287 ntBASIC17.57■□□□□ 0.4
MSH4O15457 GAPDHP40-201ENST00000505218 1006 ntBASIC17.57■□□□□ 0.4
MSH4O15457 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC17.57■□□□□ 0.4
MSH4O15457 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC17.57■□□□□ 0.4
MSH4O15457 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.57■□□□□ 0.4
MSH4O15457 AC124283.3-201ENST00000570869 594 ntBASIC17.57■□□□□ 0.4
MSH4O15457 AC025181.2-201ENST00000606994 802 ntBASIC17.57■□□□□ 0.4
MSH4O15457 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC17.57■□□□□ 0.4
MSH4O15457 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
MSH4O15457 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
MSH4O15457 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
MSH4O15457 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.57■□□□□ 0.4
MSH4O15457 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.57■□□□□ 0.4
MSH4O15457 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.57■□□□□ 0.4
MSH4O15457 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.57■□□□□ 0.4
MSH4O15457 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.57■□□□□ 0.4
MSH4O15457 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
MSH4O15457 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSH4O15457 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.56■□□□□ 0.4
MSH4O15457 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.56■□□□□ 0.4
MSH4O15457 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.56■□□□□ 0.4
MSH4O15457 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC17.56■□□□□ 0.4
MSH4O15457 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.56■□□□□ 0.4
MSH4O15457 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 AC134915.1-201ENST00000426461 574 ntBASIC17.56■□□□□ 0.4
MSH4O15457 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 GAPDHP21-201ENST00000450301 1010 ntBASIC17.56■□□□□ 0.4
MSH4O15457 INE1-201ENST00000456273 945 ntBASIC17.56■□□□□ 0.4
MSH4O15457 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.56■□□□□ 0.4
MSH4O15457 AC026410.3-201ENST00000514280 936 ntBASIC17.56■□□□□ 0.4
MSH4O15457 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
MSH4O15457 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.56■□□□□ 0.4
MSH4O15457 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.56■□□□□ 0.4
MSH4O15457 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.56■□□□□ 0.4
MSH4O15457 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
MSH4O15457 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSH4O15457 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.56■□□□□ 0.4
MSH4O15457 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
MSH4O15457 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms