Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC188H7C350 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC188H7C350 CYP4F24P-201ENST00000586049 1580 ntBASIC16.4■□□□□ 0.22
CCDC188H7C350 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CCDC188H7C350 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.4■□□□□ 0.22
CCDC188H7C350 AL031284.1-201ENST00000419297 478 ntBASIC16.4■□□□□ 0.22
CCDC188H7C350 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.4■□□□□ 0.22
CCDC188H7C350 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC188H7C350 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.4■□□□□ 0.22
CCDC188H7C350 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC188H7C350 RNA5SP415-201ENST00000517246 115 ntBASIC16.4■□□□□ 0.22
CCDC188H7C350 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.4■□□□□ 0.22
CCDC188H7C350 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC188H7C350 HNRNPUP1-201ENST00000554987 333 ntBASIC16.4■□□□□ 0.22
CCDC188H7C350 KRT19P2-202ENST00000557173 1012 ntBASIC16.4■□□□□ 0.22
CCDC188H7C350 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.4■□□□□ 0.22
CCDC188H7C350 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC188H7C350 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC188H7C350 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 AC097359.3-201ENST00000603982 1210 ntBASIC16.4■□□□□ 0.22
CCDC188H7C350 AC068137.2-201ENST00000605408 478 ntBASIC16.4■□□□□ 0.22
CCDC188H7C350 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.4■□□□□ 0.22
CCDC188H7C350 AC116407.3-201ENST00000623905 1129 ntBASIC16.4■□□□□ 0.22
CCDC188H7C350 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.4■□□□□ 0.22
CCDC188H7C350 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC188H7C350 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CCDC188H7C350 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC188H7C350 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC188H7C350 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CCDC188H7C350 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC188H7C350 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CCDC188H7C350 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC188H7C350 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC188H7C350 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC188H7C350 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC188H7C350 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC16.39■□□□□ 0.22
CCDC188H7C350 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
CCDC188H7C350 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.39■□□□□ 0.21
CCDC188H7C350 AC002056.1-201ENST00000395613 760 ntBASIC16.39■□□□□ 0.21
CCDC188H7C350 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.39■□□□□ 0.21
CCDC188H7C350 AL139010.1-201ENST00000454878 894 ntBASIC16.39■□□□□ 0.21
CCDC188H7C350 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.39■□□□□ 0.21
CCDC188H7C350 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.39■□□□□ 0.21
CCDC188H7C350 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
CCDC188H7C350 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC16.39■□□□□ 0.21
CCDC188H7C350 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.39■□□□□ 0.21
CCDC188H7C350 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CCDC188H7C350 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC188H7C350 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CCDC188H7C350 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC188H7C350 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC188H7C350 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms