Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
SMKR1H3BMG3 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC11.58□□□□□ -0.55
SMKR1H3BMG3 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC11.58□□□□□ -0.55
SMKR1H3BMG3 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 CYP51A1P2-201ENST00000419457 1499 ntBASIC11.58□□□□□ -0.56
SMKR1H3BMG3 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 ARTN-206ENST00000472435 402 ntTSL 3 BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 AC069148.1-201ENST00000608741 768 ntBASIC11.58□□□□□ -0.56
SMKR1H3BMG3 AL139288.1-201ENST00000623748 933 ntBASIC11.58□□□□□ -0.56
SMKR1H3BMG3 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 AC006504.5-208ENST00000588784 2401 ntBASIC11.58□□□□□ -0.56
SMKR1H3BMG3 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 AC129492.6-201ENST00000611383 1305 ntBASIC11.58□□□□□ -0.56
SMKR1H3BMG3 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
SMKR1H3BMG3 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 AC010327.5-201ENST00000586923 3061 ntBASIC11.57□□□□□ -0.56
SMKR1H3BMG3 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
SMKR1H3BMG3 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC11.57□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms