Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.79■■□□□ 1.08
COMMD3-BMI1R4GMX3 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.79■■□□□ 1.08
COMMD3-BMI1R4GMX3 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COMMD3-BMI1R4GMX3 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.79■■□□□ 1.08
COMMD3-BMI1R4GMX3 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COMMD3-BMI1R4GMX3 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COMMD3-BMI1R4GMX3 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COMMD3-BMI1R4GMX3 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COMMD3-BMI1R4GMX3 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
COMMD3-BMI1R4GMX3 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC21.78■■□□□ 1.08
COMMD3-BMI1R4GMX3 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.78■■□□□ 1.08
COMMD3-BMI1R4GMX3 DUX4L11-201ENST00000611504 1267 ntBASIC21.78■■□□□ 1.08
COMMD3-BMI1R4GMX3 DUX4L12-201ENST00000614593 1267 ntBASIC21.78■■□□□ 1.08
COMMD3-BMI1R4GMX3 DUX4L14-201ENST00000621227 1267 ntBASIC21.78■■□□□ 1.08
COMMD3-BMI1R4GMX3 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
COMMD3-BMI1R4GMX3 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COMMD3-BMI1R4GMX3 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COMMD3-BMI1R4GMX3 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
COMMD3-BMI1R4GMX3 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.77■■□□□ 1.08
COMMD3-BMI1R4GMX3 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC21.77■■□□□ 1.08
COMMD3-BMI1R4GMX3 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COMMD3-BMI1R4GMX3 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COMMD3-BMI1R4GMX3 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COMMD3-BMI1R4GMX3 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COMMD3-BMI1R4GMX3 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
COMMD3-BMI1R4GMX3 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.77■■□□□ 1.07
COMMD3-BMI1R4GMX3 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COMMD3-BMI1R4GMX3 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
COMMD3-BMI1R4GMX3 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.76■■□□□ 1.07
COMMD3-BMI1R4GMX3 AC008813.1-201ENST00000536597 885 ntBASIC21.76■■□□□ 1.07
COMMD3-BMI1R4GMX3 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.76■■□□□ 1.07
COMMD3-BMI1R4GMX3 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
COMMD3-BMI1R4GMX3 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COMMD3-BMI1R4GMX3 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.76■■□□□ 1.07
COMMD3-BMI1R4GMX3 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.76■■□□□ 1.07
COMMD3-BMI1R4GMX3 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COMMD3-BMI1R4GMX3 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.75■■□□□ 1.07
COMMD3-BMI1R4GMX3 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COMMD3-BMI1R4GMX3 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COMMD3-BMI1R4GMX3 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
COMMD3-BMI1R4GMX3 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COMMD3-BMI1R4GMX3 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COMMD3-BMI1R4GMX3 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
COMMD3-BMI1R4GMX3 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
COMMD3-BMI1R4GMX3 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COMMD3-BMI1R4GMX3 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COMMD3-BMI1R4GMX3 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
COMMD3-BMI1R4GMX3 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COMMD3-BMI1R4GMX3 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COMMD3-BMI1R4GMX3 AC007375.3-201ENST00000600936 2314 ntBASIC21.74■■□□□ 1.07
COMMD3-BMI1R4GMX3 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.74■■□□□ 1.07
COMMD3-BMI1R4GMX3 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.74■■□□□ 1.07
COMMD3-BMI1R4GMX3 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COMMD3-BMI1R4GMX3 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
COMMD3-BMI1R4GMX3 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COMMD3-BMI1R4GMX3 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COMMD3-BMI1R4GMX3 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
COMMD3-BMI1R4GMX3 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COMMD3-BMI1R4GMX3 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COMMD3-BMI1R4GMX3 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.73■■□□□ 1.07
COMMD3-BMI1R4GMX3 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COMMD3-BMI1R4GMX3 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COMMD3-BMI1R4GMX3 MIR219A2-201ENST00000608502 1504 ntBASIC21.73■■□□□ 1.07
COMMD3-BMI1R4GMX3 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
COMMD3-BMI1R4GMX3 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COMMD3-BMI1R4GMX3 AC148477.6-201ENST00000623746 465 ntBASIC21.72■■□□□ 1.07
COMMD3-BMI1R4GMX3 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COMMD3-BMI1R4GMX3 ZNRF2P2-203ENST00000454624 420 ntBASIC21.71■■□□□ 1.07
COMMD3-BMI1R4GMX3 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC21.71■■□□□ 1.07
COMMD3-BMI1R4GMX3 AC127496.7-201ENST00000625110 1798 ntBASIC21.71■■□□□ 1.07
COMMD3-BMI1R4GMX3 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
COMMD3-BMI1R4GMX3 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COMMD3-BMI1R4GMX3 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COMMD3-BMI1R4GMX3 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COMMD3-BMI1R4GMX3 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
COMMD3-BMI1R4GMX3 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COMMD3-BMI1R4GMX3 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COMMD3-BMI1R4GMX3 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
COMMD3-BMI1R4GMX3 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COMMD3-BMI1R4GMX3 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.7■■□□□ 1.06
COMMD3-BMI1R4GMX3 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COMMD3-BMI1R4GMX3 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COMMD3-BMI1R4GMX3 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COMMD3-BMI1R4GMX3 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COMMD3-BMI1R4GMX3 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COMMD3-BMI1R4GMX3 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COMMD3-BMI1R4GMX3 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COMMD3-BMI1R4GMX3 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
COMMD3-BMI1R4GMX3 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COMMD3-BMI1R4GMX3 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC21.69■■□□□ 1.06
COMMD3-BMI1R4GMX3 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COMMD3-BMI1R4GMX3 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COMMD3-BMI1R4GMX3 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COMMD3-BMI1R4GMX3 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
COMMD3-BMI1R4GMX3 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COMMD3-BMI1R4GMX3 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.68■■□□□ 1.06
COMMD3-BMI1R4GMX3 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COMMD3-BMI1R4GMX3 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
COMMD3-BMI1R4GMX3 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COMMD3-BMI1R4GMX3 HES6-205ENST00000409356 528 ntTSL 2 BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms