Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
PCDHA3Q9Y5H8 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
PCDHA3Q9Y5H8 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
PCDHA3Q9Y5H8 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PCDHA3Q9Y5H8 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
PCDHA3Q9Y5H8 AC133552.2-201ENST00000619106 1032 ntBASIC24.44■■□□□ 1.5
PCDHA3Q9Y5H8 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
PCDHA3Q9Y5H8 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PCDHA3Q9Y5H8 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
PCDHA3Q9Y5H8 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC24.43■■□□□ 1.5
PCDHA3Q9Y5H8 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
PCDHA3Q9Y5H8 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHA3Q9Y5H8 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHA3Q9Y5H8 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHA3Q9Y5H8 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHA3Q9Y5H8 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHA3Q9Y5H8 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHA3Q9Y5H8 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
PCDHA3Q9Y5H8 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHA3Q9Y5H8 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHA3Q9Y5H8 AC133561.1-201ENST00000568600 2415 ntBASIC24.42■■□□□ 1.5
PCDHA3Q9Y5H8 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHA3Q9Y5H8 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHA3Q9Y5H8 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHA3Q9Y5H8 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHA3Q9Y5H8 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC24.41■■□□□ 1.5
PCDHA3Q9Y5H8 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHA3Q9Y5H8 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
PCDHA3Q9Y5H8 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHA3Q9Y5H8 ABCB10P4-201ENST00000566803 2184 ntBASIC24.4■■□□□ 1.5
PCDHA3Q9Y5H8 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHA3Q9Y5H8 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHA3Q9Y5H8 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHA3Q9Y5H8 RNF126P1-201ENST00000567452 1320 ntBASIC24.39■■□□□ 1.5
PCDHA3Q9Y5H8 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
PCDHA3Q9Y5H8 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
PCDHA3Q9Y5H8 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC24.39■■□□□ 1.49
PCDHA3Q9Y5H8 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHA3Q9Y5H8 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC24.39■■□□□ 1.49
PCDHA3Q9Y5H8 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHA3Q9Y5H8 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHA3Q9Y5H8 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC24.39■■□□□ 1.49
PCDHA3Q9Y5H8 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
PCDHA3Q9Y5H8 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC24.38■■□□□ 1.49
PCDHA3Q9Y5H8 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
PCDHA3Q9Y5H8 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
PCDHA3Q9Y5H8 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHA3Q9Y5H8 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHA3Q9Y5H8 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHA3Q9Y5H8 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHA3Q9Y5H8 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHA3Q9Y5H8 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHA3Q9Y5H8 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
PCDHA3Q9Y5H8 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
PCDHA3Q9Y5H8 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHA3Q9Y5H8 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC24.36■■□□□ 1.49
PCDHA3Q9Y5H8 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC24.36■■□□□ 1.49
PCDHA3Q9Y5H8 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC24.36■■□□□ 1.49
PCDHA3Q9Y5H8 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC24.35■■□□□ 1.49
PCDHA3Q9Y5H8 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHA3Q9Y5H8 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHA3Q9Y5H8 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHA3Q9Y5H8 ABHD17AP3-201ENST00000503096 1137 ntBASIC24.35■■□□□ 1.49
PCDHA3Q9Y5H8 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC24.35■■□□□ 1.49
PCDHA3Q9Y5H8 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
PCDHA3Q9Y5H8 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHA3Q9Y5H8 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC24.34■■□□□ 1.49
PCDHA3Q9Y5H8 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA3Q9Y5H8 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA3Q9Y5H8 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA3Q9Y5H8 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC24.34■■□□□ 1.49
PCDHA3Q9Y5H8 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC24.34■■□□□ 1.49
PCDHA3Q9Y5H8 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA3Q9Y5H8 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA3Q9Y5H8 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA3Q9Y5H8 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA3Q9Y5H8 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC24.34■■□□□ 1.49
PCDHA3Q9Y5H8 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHA3Q9Y5H8 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHA3Q9Y5H8 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHA3Q9Y5H8 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHA3Q9Y5H8 RPS2P7-201ENST00000447334 885 ntBASIC24.33■■□□□ 1.49
PCDHA3Q9Y5H8 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHA3Q9Y5H8 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHA3Q9Y5H8 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC24.33■■□□□ 1.48
PCDHA3Q9Y5H8 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.48
PCDHA3Q9Y5H8 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC24.33■■□□□ 1.48
PCDHA3Q9Y5H8 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHA3Q9Y5H8 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHA3Q9Y5H8 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHA3Q9Y5H8 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHA3Q9Y5H8 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHA3Q9Y5H8 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
PCDHA3Q9Y5H8 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC24.32■■□□□ 1.48
PCDHA3Q9Y5H8 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHA3Q9Y5H8 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHA3Q9Y5H8 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHA3Q9Y5H8 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHA3Q9Y5H8 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHA3Q9Y5H8 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms