Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MIR4281-201ENST00000580852 62 ntBASIC21.98■■□□□ 1.11
PTCHD1Q96NR3 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.98■■□□□ 1.11
PTCHD1Q96NR3 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PTCHD1Q96NR3 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PTCHD1Q96NR3 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PTCHD1Q96NR3 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
PTCHD1Q96NR3 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PTCHD1Q96NR3 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PTCHD1Q96NR3 AC135731.1-201ENST00000569415 2548 ntBASIC21.97■■□□□ 1.11
PTCHD1Q96NR3 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.96■■□□□ 1.11
PTCHD1Q96NR3 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTCHD1Q96NR3 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
PTCHD1Q96NR3 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTCHD1Q96NR3 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.96■■□□□ 1.11
PTCHD1Q96NR3 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTCHD1Q96NR3 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTCHD1Q96NR3 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
PTCHD1Q96NR3 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PTCHD1Q96NR3 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.96■■□□□ 1.11
PTCHD1Q96NR3 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.11
PTCHD1Q96NR3 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PTCHD1Q96NR3 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTCHD1Q96NR3 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTCHD1Q96NR3 BX664725.1-201ENST00000438252 379 ntBASIC21.95■■□□□ 1.1
PTCHD1Q96NR3 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
PTCHD1Q96NR3 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PTCHD1Q96NR3 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTCHD1Q96NR3 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTCHD1Q96NR3 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTCHD1Q96NR3 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.95■■□□□ 1.1
PTCHD1Q96NR3 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
PTCHD1Q96NR3 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTCHD1Q96NR3 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.94■■□□□ 1.1
PTCHD1Q96NR3 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
PTCHD1Q96NR3 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
PTCHD1Q96NR3 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTCHD1Q96NR3 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.94■■□□□ 1.1
PTCHD1Q96NR3 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
PTCHD1Q96NR3 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PTCHD1Q96NR3 AC239859.2-201ENST00000444165 318 ntBASIC21.94■■□□□ 1.1
PTCHD1Q96NR3 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.94■■□□□ 1.1
PTCHD1Q96NR3 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PTCHD1Q96NR3 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PTCHD1Q96NR3 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PTCHD1Q96NR3 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
PTCHD1Q96NR3 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTCHD1Q96NR3 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
PTCHD1Q96NR3 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PTCHD1Q96NR3 Z92544.1-202ENST00000571933 1220 ntBASIC21.93■■□□□ 1.1
PTCHD1Q96NR3 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.93■■□□□ 1.1
PTCHD1Q96NR3 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.93■■□□□ 1.1
PTCHD1Q96NR3 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTCHD1Q96NR3 AC137630.3-201ENST00000607245 391 ntBASIC21.93■■□□□ 1.1
PTCHD1Q96NR3 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
PTCHD1Q96NR3 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTCHD1Q96NR3 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.92■■□□□ 1.1
PTCHD1Q96NR3 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTCHD1Q96NR3 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTCHD1Q96NR3 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTCHD1Q96NR3 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PTCHD1Q96NR3 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.92■■□□□ 1.1
PTCHD1Q96NR3 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.92■■□□□ 1.1
PTCHD1Q96NR3 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.92■■□□□ 1.1
PTCHD1Q96NR3 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTCHD1Q96NR3 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.92■■□□□ 1.1
PTCHD1Q96NR3 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.92■■□□□ 1.1
PTCHD1Q96NR3 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTCHD1Q96NR3 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTCHD1Q96NR3 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 AC022211.4-201ENST00000625094 2161 ntBASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 KRT125P-201ENST00000546827 989 ntBASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTCHD1Q96NR3 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PTCHD1Q96NR3 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTCHD1Q96NR3 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.9■■□□□ 1.1
PTCHD1Q96NR3 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.9■■□□□ 1.1
PTCHD1Q96NR3 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
PTCHD1Q96NR3 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
PTCHD1Q96NR3 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.89■■□□□ 1.09
PTCHD1Q96NR3 MIR6089-201ENST00000616698 64 ntBASIC21.89■■□□□ 1.09
PTCHD1Q96NR3 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTCHD1Q96NR3 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PTCHD1Q96NR3 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTCHD1Q96NR3 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
PTCHD1Q96NR3 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
PTCHD1Q96NR3 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.88■■□□□ 1.09
PTCHD1Q96NR3 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms