Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28AQ8IWP9 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28AQ8IWP9 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC28AQ8IWP9 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC28AQ8IWP9 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC28AQ8IWP9 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC28AQ8IWP9 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.7
CCDC28AQ8IWP9 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CCDC28AQ8IWP9 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28AQ8IWP9 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28AQ8IWP9 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
CCDC28AQ8IWP9 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
CCDC28AQ8IWP9 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28AQ8IWP9 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28AQ8IWP9 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28AQ8IWP9 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28AQ8IWP9 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28AQ8IWP9 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
CCDC28AQ8IWP9 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC28AQ8IWP9 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC28AQ8IWP9 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC28AQ8IWP9 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC28AQ8IWP9 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC28AQ8IWP9 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC28AQ8IWP9 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC28AQ8IWP9 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC28AQ8IWP9 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC19.38■□□□□ 0.69
CCDC28AQ8IWP9 AC097358.2-201ENST00000607541 1159 ntBASIC19.38■□□□□ 0.69
CCDC28AQ8IWP9 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CCDC28AQ8IWP9 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC28AQ8IWP9 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC28AQ8IWP9 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC28AQ8IWP9 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC28AQ8IWP9 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC28AQ8IWP9 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC28AQ8IWP9 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC28AQ8IWP9 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC28AQ8IWP9 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC28AQ8IWP9 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC28AQ8IWP9 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28AQ8IWP9 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28AQ8IWP9 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28AQ8IWP9 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28AQ8IWP9 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC28AQ8IWP9 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28AQ8IWP9 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
CCDC28AQ8IWP9 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC28AQ8IWP9 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC28AQ8IWP9 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC28AQ8IWP9 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC28AQ8IWP9 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC28AQ8IWP9 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC28AQ8IWP9 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC19.35■□□□□ 0.69
CCDC28AQ8IWP9 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC28AQ8IWP9 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC28AQ8IWP9 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC28AQ8IWP9 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC28AQ8IWP9 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC28AQ8IWP9 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC28AQ8IWP9 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC28AQ8IWP9 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC28AQ8IWP9 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CCDC28AQ8IWP9 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC28AQ8IWP9 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC28AQ8IWP9 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
CCDC28AQ8IWP9 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.34■□□□□ 0.69
CCDC28AQ8IWP9 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC28AQ8IWP9 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC28AQ8IWP9 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.33■□□□□ 0.69
CCDC28AQ8IWP9 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC28AQ8IWP9 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC28AQ8IWP9 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC28AQ8IWP9 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC28AQ8IWP9 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC19.33■□□□□ 0.69
CCDC28AQ8IWP9 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC19.33■□□□□ 0.68
CCDC28AQ8IWP9 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC28AQ8IWP9 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.33■□□□□ 0.68
CCDC28AQ8IWP9 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28AQ8IWP9 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28AQ8IWP9 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28AQ8IWP9 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28AQ8IWP9 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC28AQ8IWP9 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC28AQ8IWP9 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC28AQ8IWP9 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CCDC28AQ8IWP9 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CCDC28AQ8IWP9 EBPL-202ENST00000378268 680 ntTSL 3 BASIC19.31■□□□□ 0.68
CCDC28AQ8IWP9 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CCDC28AQ8IWP9 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CCDC28AQ8IWP9 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC28AQ8IWP9 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CCDC28AQ8IWP9 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC28AQ8IWP9 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC28AQ8IWP9 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
CCDC28AQ8IWP9 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC28AQ8IWP9 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
CCDC28AQ8IWP9 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC28AQ8IWP9 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC28AQ8IWP9 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.3■□□□□ 0.68
CCDC28AQ8IWP9 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms