Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC58Q4VC31 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC58Q4VC31 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC58Q4VC31 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC58Q4VC31 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC58Q4VC31 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC58Q4VC31 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC58Q4VC31 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
CCDC58Q4VC31 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC58Q4VC31 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC58Q4VC31 DUSP8P5-201ENST00000422884 1815 ntBASIC20.71■□□□□ 0.91
CCDC58Q4VC31 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC58Q4VC31 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC58Q4VC31 AC004812.2-201ENST00000611079 2094 ntBASIC20.71■□□□□ 0.91
CCDC58Q4VC31 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC58Q4VC31 ZNRF2P2-203ENST00000454624 420 ntBASIC20.71■□□□□ 0.91
CCDC58Q4VC31 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC58Q4VC31 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC58Q4VC31 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC58Q4VC31 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC58Q4VC31 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC58Q4VC31 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC58Q4VC31 RPS2P35-201ENST00000443417 897 ntBASIC20.7■□□□□ 0.9
CCDC58Q4VC31 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC58Q4VC31 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC58Q4VC31 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC58Q4VC31 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.69■□□□□ 0.9
CCDC58Q4VC31 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
CCDC58Q4VC31 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.69■□□□□ 0.9
CCDC58Q4VC31 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CCDC58Q4VC31 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC58Q4VC31 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC58Q4VC31 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCDC58Q4VC31 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC58Q4VC31 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC58Q4VC31 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.68■□□□□ 0.9
CCDC58Q4VC31 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC58Q4VC31 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.68■□□□□ 0.9
CCDC58Q4VC31 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.68■□□□□ 0.9
CCDC58Q4VC31 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC58Q4VC31 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC58Q4VC31 AC025884.2-201ENST00000553429 711 ntBASIC20.68■□□□□ 0.9
CCDC58Q4VC31 MIR3960-201ENST00000583311 91 ntBASIC20.68■□□□□ 0.9
CCDC58Q4VC31 CR559946.2-201ENST00000623684 991 ntBASIC20.68■□□□□ 0.9
CCDC58Q4VC31 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC58Q4VC31 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CCDC58Q4VC31 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC58Q4VC31 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CCDC58Q4VC31 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCDC58Q4VC31 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CCDC58Q4VC31 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.66■□□□□ 0.9
CCDC58Q4VC31 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCDC58Q4VC31 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.66■□□□□ 0.9
CCDC58Q4VC31 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC58Q4VC31 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CCDC58Q4VC31 SLC25A24-204ENST00000569674 2357 ntBASIC20.65■□□□□ 0.9
CCDC58Q4VC31 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC58Q4VC31 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC58Q4VC31 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC58Q4VC31 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC58Q4VC31 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.65■□□□□ 0.9
CCDC58Q4VC31 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC58Q4VC31 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
CCDC58Q4VC31 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC58Q4VC31 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC58Q4VC31 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC58Q4VC31 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC58Q4VC31 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC58Q4VC31 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC58Q4VC31 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CCDC58Q4VC31 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC58Q4VC31 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC58Q4VC31 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC58Q4VC31 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CCDC58Q4VC31 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC58Q4VC31 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC58Q4VC31 AL157400.5-201ENST00000507624 621 ntBASIC20.62■□□□□ 0.89
CCDC58Q4VC31 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC58Q4VC31 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC58Q4VC31 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC58Q4VC31 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC58Q4VC31 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC58Q4VC31 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CCDC58Q4VC31 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC58Q4VC31 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms