Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.65■■□□□ 1.06
RNF4P78317 MIR6089-201ENST00000616698 64 ntBASIC21.65■■□□□ 1.06
RNF4P78317 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
RNF4P78317 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF4P78317 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.65■■□□□ 1.06
RNF4P78317 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
RNF4P78317 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF4P78317 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF4P78317 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
RNF4P78317 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RNF4P78317 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.64■■□□□ 1.06
RNF4P78317 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RNF4P78317 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
RNF4P78317 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
RNF4P78317 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.64■■□□□ 1.05
RNF4P78317 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF4P78317 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF4P78317 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RNF4P78317 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF4P78317 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RNF4P78317 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.63■■□□□ 1.05
RNF4P78317 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
RNF4P78317 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF4P78317 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF4P78317 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.63■■□□□ 1.05
RNF4P78317 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
RNF4P78317 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.63■■□□□ 1.05
RNF4P78317 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RNF4P78317 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RNF4P78317 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RNF4P78317 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RNF4P78317 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RNF4P78317 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.63■■□□□ 1.05
RNF4P78317 AC022211.4-201ENST00000625094 2161 ntBASIC21.63■■□□□ 1.05
RNF4P78317 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF4P78317 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RNF4P78317 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
RNF4P78317 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.62■■□□□ 1.05
RNF4P78317 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.62■■□□□ 1.05
RNF4P78317 KRT125P-201ENST00000546827 989 ntBASIC21.62■■□□□ 1.05
RNF4P78317 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
RNF4P78317 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
RNF4P78317 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.61■■□□□ 1.05
RNF4P78317 AC020928.2-201ENST00000588717 2197 ntBASIC21.61■■□□□ 1.05
RNF4P78317 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RNF4P78317 AC021242.3-201ENST00000607598 1377 ntBASIC21.61■■□□□ 1.05
RNF4P78317 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RNF4P78317 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.6■■□□□ 1.05
RNF4P78317 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.6■■□□□ 1.05
RNF4P78317 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RNF4P78317 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.6■■□□□ 1.05
RNF4P78317 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
RNF4P78317 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.6■■□□□ 1.05
RNF4P78317 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.6■■□□□ 1.05
RNF4P78317 AF131216.4-201ENST00000638924 1588 ntBASIC21.6■■□□□ 1.05
RNF4P78317 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RNF4P78317 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RNF4P78317 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNF4P78317 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.59■■□□□ 1.05
RNF4P78317 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.59■■□□□ 1.05
RNF4P78317 AC135731.1-201ENST00000569415 2548 ntBASIC21.59■■□□□ 1.05
RNF4P78317 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RNF4P78317 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
RNF4P78317 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
RNF4P78317 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
RNF4P78317 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RNF4P78317 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RNF4P78317 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.58■■□□□ 1.05
RNF4P78317 MIR4787-201ENST00000607364 84 ntBASIC21.58■■□□□ 1.05
RNF4P78317 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.58■■□□□ 1.04
RNF4P78317 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
RNF4P78317 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RNF4P78317 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RNF4P78317 GUSBP5-201ENST00000418136 578 ntBASIC21.57■■□□□ 1.04
RNF4P78317 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.57■■□□□ 1.04
RNF4P78317 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.57■■□□□ 1.04
RNF4P78317 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
RNF4P78317 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RNF4P78317 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.57■■□□□ 1.04
RNF4P78317 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
RNF4P78317 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF4P78317 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF4P78317 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF4P78317 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF4P78317 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF4P78317 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF4P78317 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF4P78317 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.56■■□□□ 1.04
RNF4P78317 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.56■■□□□ 1.04
RNF4P78317 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF4P78317 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RNF4P78317 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
RNF4P78317 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF4P78317 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.55■■□□□ 1.04
RNF4P78317 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RNF4P78317 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
RNF4P78317 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF4P78317 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RNF4P78317 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.54■■□□□ 1.04
RNF4P78317 AC142381.3-201ENST00000568208 1670 ntBASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms