Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA3P55318 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA3P55318 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA3P55318 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
FOXA3P55318 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC17.42■□□□□ 0.38
FOXA3P55318 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA3P55318 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA3P55318 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
FOXA3P55318 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
FOXA3P55318 ABCB10P4-201ENST00000566803 2184 ntBASIC17.42■□□□□ 0.38
FOXA3P55318 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
FOXA3P55318 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
FOXA3P55318 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC17.42■□□□□ 0.38
FOXA3P55318 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA3P55318 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA3P55318 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA3P55318 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
FOXA3P55318 MIR3665-201ENST00000578708 105 ntBASIC17.41■□□□□ 0.38
FOXA3P55318 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA3P55318 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA3P55318 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
FOXA3P55318 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
FOXA3P55318 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
FOXA3P55318 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA3P55318 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA3P55318 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA3P55318 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
FOXA3P55318 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA3P55318 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA3P55318 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA3P55318 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
FOXA3P55318 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA3P55318 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA3P55318 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC17.4■□□□□ 0.38
FOXA3P55318 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA3P55318 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
FOXA3P55318 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC17.39■□□□□ 0.37
FOXA3P55318 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC17.39■□□□□ 0.37
FOXA3P55318 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
FOXA3P55318 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA3P55318 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA3P55318 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
FOXA3P55318 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
FOXA3P55318 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA3P55318 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA3P55318 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
FOXA3P55318 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC17.39■□□□□ 0.37
FOXA3P55318 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC17.39■□□□□ 0.37
FOXA3P55318 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA3P55318 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
FOXA3P55318 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
FOXA3P55318 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA3P55318 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC17.38■□□□□ 0.37
FOXA3P55318 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA3P55318 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA3P55318 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA3P55318 MIR6089-201ENST00000616698 64 ntBASIC17.38■□□□□ 0.37
FOXA3P55318 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA3P55318 LSR-205ENST00000427250 1606 ntTSL 2 BASIC17.38■□□□□ 0.37
FOXA3P55318 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA3P55318 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA3P55318 STK25-234ENST00000535007 2459 ntTSL 2 BASIC17.38■□□□□ 0.37
FOXA3P55318 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA3P55318 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
FOXA3P55318 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC17.37■□□□□ 0.37
FOXA3P55318 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
FOXA3P55318 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
FOXA3P55318 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC17.37■□□□□ 0.37
FOXA3P55318 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA3P55318 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXA3P55318 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA3P55318 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
FOXA3P55318 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC17.36■□□□□ 0.37
FOXA3P55318 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA3P55318 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA3P55318 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA3P55318 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC17.36■□□□□ 0.37
FOXA3P55318 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA3P55318 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA3P55318 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC17.36■□□□□ 0.37
FOXA3P55318 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC17.36■□□□□ 0.37
FOXA3P55318 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA3P55318 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
FOXA3P55318 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
FOXA3P55318 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA3P55318 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA3P55318 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC17.35■□□□□ 0.37
FOXA3P55318 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA3P55318 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC17.35■□□□□ 0.37
FOXA3P55318 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA3P55318 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA3P55318 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
FOXA3P55318 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
FOXA3P55318 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA3P55318 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA3P55318 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA3P55318 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA3P55318 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA3P55318 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
FOXA3P55318 GALC-202ENST00000393568 2054 ntTSL 2 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms