Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
FOXA1P55317 HES4-204ENST00000484667 667 ntTSL 3 BASIC22.64■■□□□ 1.21
FOXA1P55317 AC133552.2-201ENST00000619106 1032 ntBASIC22.64■■□□□ 1.21
FOXA1P55317 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
FOXA1P55317 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
FOXA1P55317 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.63■■□□□ 1.21
FOXA1P55317 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
FOXA1P55317 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
FOXA1P55317 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC22.63■■□□□ 1.21
FOXA1P55317 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
FOXA1P55317 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
FOXA1P55317 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC22.63■■□□□ 1.21
FOXA1P55317 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.62■■□□□ 1.21
FOXA1P55317 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
FOXA1P55317 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
FOXA1P55317 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
FOXA1P55317 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
FOXA1P55317 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC22.62■■□□□ 1.21
FOXA1P55317 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
FOXA1P55317 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
FOXA1P55317 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
FOXA1P55317 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
FOXA1P55317 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
FOXA1P55317 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
FOXA1P55317 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
FOXA1P55317 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.61■■□□□ 1.21
FOXA1P55317 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
FOXA1P55317 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
FOXA1P55317 AC133561.1-201ENST00000568600 2415 ntBASIC22.6■■□□□ 1.21
FOXA1P55317 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC22.6■■□□□ 1.21
FOXA1P55317 ABHD17AP3-201ENST00000503096 1137 ntBASIC22.6■■□□□ 1.21
FOXA1P55317 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
FOXA1P55317 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
FOXA1P55317 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
FOXA1P55317 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
FOXA1P55317 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
FOXA1P55317 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
FOXA1P55317 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
FOXA1P55317 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
FOXA1P55317 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC22.59■■□□□ 1.21
FOXA1P55317 KRT18P10-201ENST00000388836 1287 ntBASIC22.59■■□□□ 1.21
FOXA1P55317 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
FOXA1P55317 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
FOXA1P55317 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC22.59■■□□□ 1.21
FOXA1P55317 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
FOXA1P55317 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
FOXA1P55317 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
FOXA1P55317 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
FOXA1P55317 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC22.58■■□□□ 1.21
FOXA1P55317 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.58■■□□□ 1.21
FOXA1P55317 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
FOXA1P55317 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
FOXA1P55317 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
FOXA1P55317 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
FOXA1P55317 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
FOXA1P55317 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
FOXA1P55317 RNF126P1-201ENST00000567452 1320 ntBASIC22.57■■□□□ 1.2
FOXA1P55317 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
FOXA1P55317 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
FOXA1P55317 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
FOXA1P55317 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC22.57■■□□□ 1.2
FOXA1P55317 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
FOXA1P55317 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC22.57■■□□□ 1.2
FOXA1P55317 SPCS2P3-201ENST00000500401 656 ntBASIC22.57■■□□□ 1.2
FOXA1P55317 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
FOXA1P55317 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
FOXA1P55317 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
FOXA1P55317 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
FOXA1P55317 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
FOXA1P55317 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.56■■□□□ 1.2
FOXA1P55317 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC22.56■■□□□ 1.2
FOXA1P55317 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
FOXA1P55317 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
FOXA1P55317 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.56■■□□□ 1.2
FOXA1P55317 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
FOXA1P55317 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC22.56■■□□□ 1.2
FOXA1P55317 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
FOXA1P55317 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
FOXA1P55317 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.55■■□□□ 1.2
FOXA1P55317 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
FOXA1P55317 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
FOXA1P55317 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC22.55■■□□□ 1.2
FOXA1P55317 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
FOXA1P55317 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC22.55■■□□□ 1.2
FOXA1P55317 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
FOXA1P55317 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
FOXA1P55317 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
FOXA1P55317 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
FOXA1P55317 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
FOXA1P55317 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
FOXA1P55317 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC22.55■■□□□ 1.2
FOXA1P55317 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
FOXA1P55317 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
FOXA1P55317 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
FOXA1P55317 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
FOXA1P55317 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC22.54■■□□□ 1.2
FOXA1P55317 AL592293.1-201ENST00000502889 1188 ntBASIC22.54■■□□□ 1.2
FOXA1P55317 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
FOXA1P55317 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.54■■□□□ 1.2
FOXA1P55317 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms